Browse Element(s) Details


OsAffx.11116.1.S1_at

Description tigr:9629.m01911
TID=OsAffx.11116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1957011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19500NANA1+11068258..11068569hypothetical protein
LOC_Os01g19510Os.31529.2.A1_at3/111+11072489..11072927hypothetical protein
LOC_Os01g19529Os.23685.1.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.1.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19570OsAffx.11116.1.S1_at11/111+11091513..11091908hypothetical protein
LOC_Os01g19580OsAffx.11117.1.S1_at11/111+11092969..11095341hypothetical protein
LOC_Os01g19590Os.45976.1.S1_at2/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19590Os.45976.1.S1_x_at1/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19600Os.46306.1.S1_x_at1/111+11101997..11105326transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19610Os.43094.1.S1_at10/111+11106590..11110321expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11116.1.S1_at--186--10811Chr01:11091848..11091872 (25 bp)
TTGTGCATTCCAGTCCAGCACTTGG
LOC_Os01g19570
OsAffx.11116.1.S1_at--1088--5091Chr01:11091831..11091855 (25 bp)
GCACTTGGCTCACGCGAGAGCTGTA
LOC_Os01g19570
OsAffx.11116.1.S1_at--251--1371Chr01:11091815..11091839 (25 bp)
AGAGCTGTAGTTGGCCGCGCCGCAC
LOC_Os01g19570
OsAffx.11116.1.S1_at--506--7191Chr01:11091780..11091804 (25 bp)
GTCGGAACTCATGCCGACGGGTCTC
LOC_Os01g19570
OsAffx.11116.1.S1_at--711--8411Chr01:11091750..11091774 (25 bp)
GGCCGCACCACATTTGGGAGCAGAG
LOC_Os01g19570
OsAffx.11116.1.S1_at--497--3431Chr01:11091730..11091754 (25 bp)
CAGAGTTGGAGCTCGCTGTGGCCAT
LOC_Os01g19570
OsAffx.11116.1.S1_at--57--9351Chr01:11091718..11091742 (25 bp)
TCGCTGTGGCCATTGTTGTCGCTGG
LOC_Os01g19570
OsAffx.11116.1.S1_at--1109--10771Chr01:11091687..11091711 (25 bp)
TTGTTGCTACTACTGGCGCCTCGAG
LOC_Os01g19570
OsAffx.11116.1.S1_at--1138--9891Chr01:11091680..11091704 (25 bp)
TACTACTGGCGCCTCGAGGTCAAGT
LOC_Os01g19570
OsAffx.11116.1.S1_at--749--3311Chr01:11091633..11091657 (25 bp)
CACAGGACATGCTCGAGTCGGCCAT
LOC_Os01g19570
OsAffx.11116.1.S1_at--510--6211Chr01:11091575..11091599 (25 bp)
GAGGCTCCACCTGAAGTCGGAGAGA
LOC_Os01g19570
Target Sequence 
TTGTGCATTCCAGTCCAGCACTTGGCTCACGCGAGAGCTGTAGTTGGCCGCGCCGCACACAGAGCACCGTCGGAACTCAT
GCCGACGGGTCTCCCTCCGGCCGCACCACATTTGGGAGCAGAGTTGGAGCTCGCTGTGGCCATTGTTGTCGCTGGTGGCT
GTTGTTGCTACTACTGGCGCCTCGAGGTCAAGTTTCTTGGCCGTCGCCTGCACGCCACAGGACATGCTCGAGTCGGCCAT
GAAGAGGTTGGCCGGGTAGGGCTCCACCTCCGGGAGGCTCCACCTGAAGTCGGAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis