Browse Element(s) Details


OsAffx.11209.1.S1_at

Description tigr:9629.m02533
TID=OsAffx.11209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2608010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26020Os.18293.1.S1_at9/111+14734782..14737053expressed protein
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11209.1.S1_at--1148--6351Chr01:14760317..14760341 (25 bp)
GATCCAGATCCTCCTGGAGTTTTGA
LOC_Os01g26080
OsAffx.11209.1.S1_at--1056--551Chr01:14760324..14760348 (25 bp)
ATCCTCCTGGAGTTTTGACGGCGCG
LOC_Os01g26080
OsAffx.11209.1.S1_at--1064--9251Chr01:14760328..14760352 (25 bp)
TCCTGGAGTTTTGACGGCGCGTCCG
LOC_Os01g26080
OsAffx.11209.1.S1_at--885--5371NONE
GAAGCAACAAGGAGAGTGGTTCTAA
NONE
OsAffx.11209.1.S1_at--293--6131Chr01:14761476..14761500 (25 bp)
GAGTGGTTCTAACTTCTCCAAGAGA
LOC_Os01g26080
OsAffx.11209.1.S1_at--411--3651Chr01:14761488..14761512 (25 bp)
CTTCTCCAAGAGAACCCATCAAGTT
LOC_Os01g26080
OsAffx.11209.1.S1_at--602--5971Chr01:14761497..14761521 (25 bp)
GAGAACCCATCAAGTTCAAGAACAC
LOC_Os01g26080
OsAffx.11209.1.S1_at--524--1431Chr01:14761515..14761539 (25 bp)
AGAACACAGAGGATGGTAGGTGCCT
LOC_Os01g26080
OsAffx.11209.1.S1_at--140--991Chr01:14761524..14761548 (25 bp)
AGGATGGTAGGTGCCTCACAGCAGC
LOC_Os01g26080
OsAffx.11209.1.S1_at--915--8571Chr01:14761528..14761552 (25 bp)
TGGTAGGTGCCTCACAGCAGCACAA
LOC_Os01g26080
OsAffx.11209.1.S1_at--669--9191Chr01:14761535..14761559 (25 bp)
TGCCTCACAGCAGCACAAGGTCTTG
LOC_Os01g26080
Target Sequence 
GATCCAGATCCTCCTGGAGTTTTGACGGCGCGTCCGCAGCCAGCTGCTCGCTGCCGGAGCCAGAATTGGGGAATCGGCGG
CGTCGGGGGAGGAGAGGAAGCAACAAGGAGAGTGGTTCTAACTTCTCCAAGAGAACCCATCAAGTTCAAGAACACAGAGG
ATGGTAGGTGCCTCACAGCAGCACAAGGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis