Browse Element(s) Details


OsAffx.11245.1.S1_at

Description tigr:9629.m02739
TID=OsAffx.11245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2861010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative
LOC_Os01g28580Os.26963.1.A1_at11/111+16319625..16323710expressed protein
LOC_Os01g28580OsAffx.19810.4.S1_s_at1/111+16319625..16323710expressed protein
LOC_Os01g28590OsAffx.11244.1.S1_at11/111+16324389..16324907hypothetical protein
LOC_Os01g28600OsAffx.23433.1.S1_at11/111+16327831..16330192Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g28610OsAffx.11245.1.S1_at10/111+16331527..16333544hypothetical protein
LOC_Os01g28620OsAffx.23434.2.S1_x_at11/111+16334793..16346615hypothetical protein
LOC_Os01g28630Os.52782.1.S1_at1/111+16347093..16348389retrotransposon protein, putative, unclassified
LOC_Os01g28640OsAffx.8876.1.S1_at11/111+16351833..16352405retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28650OsAffx.25778.2.S1_at9/111+16357073..16357549hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11245.1.S1_at--844--4111Chr01:16332343..16332367 (25 bp)
CGAAGGATTTTTGTTGCTGGAGCGT
LOC_Os01g28610
OsAffx.11245.1.S1_at--721--9351NONE
TCGCATCACCGCGTCAAGAATGGAG
NONE
OsAffx.11245.1.S1_at--479--8051Chr01:16332998..16333022 (25 bp)
GGAGAATGCTTCAGTTGTTAATGCT
LOC_Os01g28610
OsAffx.11245.1.S1_at--536--4571Chr01:16333034..16333058 (25 bp)
GCGCGATGAGTACGGCATAGACACT
LOC_Os01g28610
OsAffx.11245.1.S1_at--261--31Chr01:16333063..16333087 (25 bp)
ATTGGATGTCCCTGAGCATGCGAGC
LOC_Os01g28610
OsAffx.11245.1.S1_at--998--5851Chr01:16333084..16333108 (25 bp)
GAGCCACCCAACGAAAATGGAGAGT
LOC_Os01g28610
OsAffx.11245.1.S1_at--936--4091Chr01:16333255..16333279 (25 bp)
CGAATCAAATTGTTCATGCTGGAGC
LOC_Os01g28610
OsAffx.11245.1.S1_at--165--5391Chr01:16333282..16333306 (25 bp)
GAAGCATGTTTATATGCTGAACCAC
LOC_Os01g28610
OsAffx.11245.1.S1_at--798--4751Chr01:16333297..16333321 (25 bp)
GCTGAACCACAGATGGGCCTTGGCA
LOC_Os01g28610
OsAffx.11245.1.S1_at--327--5851Chr01:16333428..16333452 (25 bp)
GACCATGAGCTATACGAAGATCCGG
LOC_Os01g28610
OsAffx.11245.1.S1_at--406--5571Chr01:16333473..16333497 (25 bp)
GAAAGGCAAGCTAGACTGCAACATA
LOC_Os01g28610
Target Sequence 
CGAAGGATTTTTGTTGCTGGAGCGTGATCTAGGGCAGTTGAAGGTGGAGGTTAGGCTGCGATTTTGGGGAACGTACAGGG
AGGAGTGGAATCTGGGGTGTCGCATCACCGCGTCAAGAATGGAGAATGCTTCAGTTGTTAATGCTGATGTGGAGTGGCGC
GATGAGTACGGCATAGACACTGAAGATTGGATGTCCCTGAGCATGCGAGCCACCCAACGAAAATGGAGAGTCTGCATAGA
ATCAATCCCAAGATATAAATATCTTAAGCTGAAGTATGAAACTGCTGATGGGGTTCGAATCAAATTGTTCATGCTGGAGC
TAGAAGCATGTTTATATGCTGAACCACAGATGGGCCTTGGCAACGAAGGTGAAGACCATGAGCTATACGAAGATCCGGAT
GTTGTAAGAGAAGCCTTTGAAAGGCAAGCTAGACTGCAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis