Browse Element(s) Details


OsAffx.11284.2.S1_s_at

Description tigr:9629.m03033
TID=OsAffx.11284.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3248011/11athila transposon protein, putative
LOC_Os12g335202/11Transposable element protein, putative, Retrotrans_gag
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein
LOC_Os01g32450NANA1+18122729..18123040hypothetical protein
LOC_Os01g32460Os.45928.1.S1_at11/111+18125112..18125866expressed protein
LOC_Os01g32470OsAffx.30013.4.S1_at11/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.2.S1_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.1.S1_x_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32480OsAffx.11284.2.S1_s_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32480OsAffx.11284.2.S1_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32490OsAffx.20020.1.S1_x_at1/111+18144621..18145564hypothetical protein
LOC_Os01g32500Os.20851.1.A1_x_at2/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32500Os.55580.1.S1_at1/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32510OsAffx.8916.1.S1_x_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.8916.1.S1_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_at2/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.2.S1_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.15536.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.26939.1.S1_at1/111+18154010..18158473transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11284.2.S1_s_at--824--8952Chr12:20223877..20223898 (22 bp)
TGACAACGTGCCTGTTGGCCCGGCT
NONE
OsAffx.11284.2.S1_s_at--704--10871Chr01:18136021..18136045 (25 bp)
TTGGCCCGGCTATCAACATCGGAGA
LOC_Os01g32480
OsAffx.11284.2.S1_s_at--283--9711Chr01:18136009..18136033 (25 bp)
TCAACATCGGAGACACTGATTTCGA
LOC_Os01g32480
OsAffx.11284.2.S1_s_at--728--5071Chr01:18135976..18136000 (25 bp)
GCAGCCTGATAACTACAGTGCAGCA
LOC_Os01g32480
OsAffx.11284.2.S1_s_at--772--9811Chr01:18135967..18135991 (25 bp)
TAACTACAGTGCAGCAAAGCCCGTT
LOC_Os01g32480
OsAffx.11284.2.S1_s_at--1106--3451Chr01:18135961..18135985 (25 bp)
CAGTGCAGCAAAGCCCGTTCTGTGG
LOC_Os01g32480
OsAffx.11284.2.S1_s_at--483--2631Chr01:18135935..18135959 (25 bp)
AAGCCGAACGAAGATGCAAGCACTC
LOC_Os01g32480
OsAffx.11284.2.S1_s_at--1125--4091Chr01:18135927..18135951 (25 bp)
CGAAGATGCAAGCACTCATCTGCAG
LOC_Os01g32480
OsAffx.11284.2.S1_s_at--595--10872Chr12:20223736..20223757 (22 bp)
TTGGAGATCTGCACCACTTACACGG
LOC_Os12g33520
OsAffx.11284.2.S1_s_at--109--6412Chr12:20223731..20223755 (25 bp)
GATCTGCACCACTTACACGGTAAAA
LOC_Os12g33520
OsAffx.11284.2.S1_s_at--892--9811Chr01:18135878..18135902 (25 bp)
TACACGGTAAAAGGTGTCAGTCCGG
LOC_Os01g32480
Target Sequence 
TGACAACGTGCCTGTTGGCCCGGCTATCAACATCGGAGACACTGATTTCGATCTTAAGAGCAGCCTGATAACTACAGTGC
AGCAAAGCCCGTTCTGTGGCAAGCCGAACGAAGATGCAAGCACTCATCTGCAGCAATTCTTGGAGATCTGCACCACTTAC
ACGGTAAAAGGTGTCAGTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11284.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis