Browse Element(s) Details


OsAffx.11290.1.S1_at

Description tigr:9629.m03076
TID=OsAffx.11290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3290011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein
LOC_Os01g32930OsAffx.23479.1.S1_at11/111+18404310..18405031SGS domain containing protein, expressed
LOC_Os01g32940Os.11380.1.S1_x_at1/111+18406274..18407146hypothetical protein
LOC_Os01g32950OsAffx.23481.1.S1_at11/111+18407869..18408138hypothetical protein
LOC_Os01g32964Os.37337.1.S1_a_at10/111+18414449..18422030Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11290.1.S1_at--961--4211Chr01:18391793..18391817 (25 bp)
CCGCATGGTGCTTCGGGCGATCCCA
LOC_Os01g32900
OsAffx.11290.1.S1_at--167--3231Chr01:18391918..18391942 (25 bp)
CAAGTCGTCATCGTTCGCGGCAGAC
LOC_Os01g32900
OsAffx.11290.1.S1_at--662--7191Chr01:18391951..18391975 (25 bp)
GTCGGAGCTCGCCACTTCGTTGGCC
LOC_Os01g32900
OsAffx.11290.1.S1_at--1086--2051Chr01:18391964..18391988 (25 bp)
ACTTCGTTGGCCCAGGCGCTTGCAC
LOC_Os01g32900
OsAffx.11290.1.S1_at--1068--891Chr01:18391977..18392001 (25 bp)
AGGCGCTTGCACCACTGGCGAGCCA
LOC_Os01g32900
OsAffx.11290.1.S1_at--667--4971Chr01:18392015..18392512 (25 bp)
GCATCGACATCTCACATGCAATTCC
LOC_Os01g32900
OsAffx.11290.1.S1_at--67--3171Chr01:18392507..18392531 (25 bp)
AATTCCTTGGCAATTGCGAGCACTG
LOC_Os01g32900
OsAffx.11290.1.S1_at--892--5191Chr01:18392516..18392540 (25 bp)
GCAATTGCGAGCACTGTGCCATCAA
LOC_Os01g32900
OsAffx.11290.1.S1_at--303--8691Chr01:18392530..18392554 (25 bp)
TGTGCCATCAACCTCCAAGTGGAGT
LOC_Os01g32900
OsAffx.11290.1.S1_at--213--8051Chr01:18392550..18392574 (25 bp)
GGAGTTCCACAACTTCCACCAAGGC
LOC_Os01g32900
OsAffx.11290.1.S1_at--538--2951Chr01:18392570..18392594 (25 bp)
AAGGCGACCTCTTCGTCACGGACTA
LOC_Os01g32900
Target Sequence 
CCGCATGGTGCTTCGGGCGATCCCACCCTCATCGCCTCCGTGGTGACCACCACGTCTACCACCGCTCGCAAGGCCATCAC
TGCCCTCCTCGCCAAGCACGCCACAATTGATGCGTCCTCCTCCTCCAAGTCGTCATCGTTCGCGGCAGACGCCACTCCGT
CGGAGCTCGCCACTTCGTTGGCCCAGGCGCTTGCACCACTGGCGAGCCACCTCTACCTCCCAGCATCGACATCTCACATG
CAATTCCTTGGCAATTGCGAGCACTGTGCCATCAACCTCCAAGTGGAGTTCCACAACTTCCACCAAGGCGACCTCTTCGT
CACGGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis