Browse Element(s) Details


OsAffx.11291.1.S1_at

Description tigr:9629.m03077
TID=OsAffx.11291.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3291011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein
LOC_Os01g32930OsAffx.23479.1.S1_at11/111+18404310..18405031SGS domain containing protein, expressed
LOC_Os01g32940Os.11380.1.S1_x_at1/111+18406274..18407146hypothetical protein
LOC_Os01g32950OsAffx.23481.1.S1_at11/111+18407869..18408138hypothetical protein
LOC_Os01g32964Os.37337.1.S1_a_at10/111+18414449..18422030Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11291.1.S1_at--38--3511Chr01:18396123..18396147 (25 bp)
CATGGTGATGGAGTAGCCAGCAATG
LOC_Os01g32910
OsAffx.11291.1.S1_at--209--6251Chr01:18396117..18396141 (25 bp)
GATGGAGTAGCCAGCAATGGCACAT
LOC_Os01g32910
OsAffx.11291.1.S1_at--737--1111Chr01:18396088..18396112 (25 bp)
AGTCCCCACCATCACGGTGGGTCTT
LOC_Os01g32910
OsAffx.11291.1.S1_at--566--271Chr01:18396078..18396102 (25 bp)
ATCACGGTGGGTCTTCCAAGCTGCA
LOC_Os01g32910
OsAffx.11291.1.S1_at--3--7751Chr01:18396073..18396097 (25 bp)
GGTGGGTCTTCCAAGCTGCACGGAT
LOC_Os01g32910
OsAffx.11291.1.S1_at--696--7691Chr01:18396070..18396094 (25 bp)
GGGTCTTCCAAGCTGCACGGATCAG
LOC_Os01g32910
OsAffx.11291.1.S1_at--1147--10671Chr01:18396065..18396089 (25 bp)
TTCCAAGCTGCACGGATCAGGGCAT
LOC_Os01g32910
OsAffx.11291.1.S1_at--380--2691Chr01:18396061..18396085 (25 bp)
AAGCTGCACGGATCAGGGCATCGGA
LOC_Os01g32910
OsAffx.11291.1.S1_at--58--3851Chr01:18396058..18396082 (25 bp)
CTGCACGGATCAGGGCATCGGACCT
LOC_Os01g32910
OsAffx.11291.1.S1_at--1063--391Chr01:18396050..18396074 (25 bp)
ATCAGGGCATCGGACCTGAGTGGAA
LOC_Os01g32910
OsAffx.11291.1.S1_at--700--8091Chr01:18396039..18396063 (25 bp)
GGACCTGAGTGGAAGAGCGCGCTAG
LOC_Os01g32910
Target Sequence 
CATGGTGATGGAGTAGCCAGCAATGGCACATCCCCAGTCCCCACCATCACGGTGGGTCTTCCAAGCTGCACGGATCAGGG
CATCGGACCTGAGTGGAAGAGCGCGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis