Browse Element(s) Details


OsAffx.11292.1.S1_at

Description tigr:9629.m03078
TID=OsAffx.11292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 21453-22187
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3292011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein
LOC_Os01g32930OsAffx.23479.1.S1_at11/111+18404310..18405031SGS domain containing protein, expressed
LOC_Os01g32940Os.11380.1.S1_x_at1/111+18406274..18407146hypothetical protein
LOC_Os01g32950OsAffx.23481.1.S1_at11/111+18407869..18408138hypothetical protein
LOC_Os01g32964Os.37337.1.S1_a_at10/111+18414449..18422030Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11292.1.S1_at--710--3331Chr01:18400818..18400842 (25 bp)
CACGTGATCGCCGTAGGGCATCACG
LOC_Os01g32920
OsAffx.11292.1.S1_at--150--7711Chr01:18400845..18400869 (25 bp)
GGGTCGGTTGCCTCCTACGCGCTGC
LOC_Os01g32920
OsAffx.11292.1.S1_at--745--9951Chr01:18400860..18400884 (25 bp)
TACGCGCTGCCCAGGTGGGTCTACC
LOC_Os01g32920
OsAffx.11292.1.S1_at--129--4351Chr01:18400870..18400894 (25 bp)
CCAGGTGGGTCTACCTCGCGGCGCA
LOC_Os01g32920
OsAffx.11292.1.S1_at--753--9371Chr01:18400978..18401002 (25 bp)
TCGAGACGCGGTTGCTCAGCGTCGC
LOC_Os01g32920
OsAffx.11292.1.S1_at--26--1511Chr01:18401022..18401046 (25 bp)
AGCACTGCAGGCAGCAGCGCTCACT
LOC_Os01g32920
OsAffx.11292.1.S1_at--730--931Chr01:18401030..18401054 (25 bp)
AGGCAGCAGCGCTCACTCGTACGAG
LOC_Os01g32920
OsAffx.11292.1.S1_at--770--1651Chr01:18401037..18401061 (25 bp)
AGCGCTCACTCGTACGAGGTGTGTG
LOC_Os01g32920
OsAffx.11292.1.S1_at--690--9931Chr01:18401049..18401073 (25 bp)
TACGAGGTGTGTGCTCCTGCGGCTC
LOC_Os01g32920
OsAffx.11292.1.S1_at--850--8311Chr01:18401069..18401093 (25 bp)
GGCTCCGGCGGATGACAGCGACGAG
LOC_Os01g32920
OsAffx.11292.1.S1_at--462--2151Chr01:18401083..18401107 (25 bp)
ACAGCGACGAGGAAGCCTCGGCGAT
LOC_Os01g32920
Target Sequence 
CACGTGATCGCCGTAGGGCATCACGCGGGGTCGGTTGCCTCCTACGCGCTGCCCAGGTGGGTCTACCTCGCGGCGCACCA
CCTGCAGCCCCCGGCGGTGGGCCTGCCGTTCCACGCCACCGTTCAGGCAGCAGCCGGCGCGTGCCACGGCGGCGGCGACG
TCGAGACGCGGTTGCTCAGCGTCGCCGCCGCTGGGCGGGGCAGCAGCACTGCAGGCAGCAGCGCTCACTCGTACGAGGTG
TGTGCTCCTGCGGCTCCGGCGGATGACAGCGACGAGGAAGCCTCGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis