Browse Element(s) Details


OsAffx.11302.1.S1_at

Description gb:NM_193648.1
DB_XREF= gi:34914379
GEN=B1168H06.9
TID=OsAffx.11302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1168H06.9 (B1168H06.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g052202/11hypothetical protein
LOC_Os01g335301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05180Os.20300.1.S1_at11/1112+2287583..2289545expressed protein
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein
LOC_Os12g05260Os.2218.1.S1_at11/1112+2337073..2338158Phytosulfokines 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11302.1.S1_at--1109--10431Chr01:18784239..18784562 (25 bp)
TTACGCCATGATATGTTGCAAGGAG
LOC_Os01g33530
OsAffx.11302.1.S1_at--1012--4151NONE
CGCCATGATATGTTGCAAGGAGTAG
NONE
OsAffx.11302.1.S1_at--734--1513Chr01:18785989..18786013 (25 bp)
AGCAGCATTACAGTTTCACCAGCAG
NONE
OsAffx.11302.1.S1_at--1026--5052Chr01:18785990..18786014 (25 bp)
GCAGCATTACAGTTTCACCAGCAGC
NONE
OsAffx.11302.1.S1_at--562--3411Chr01:18786014..18786038 (25 bp)
CAGCAGCCGCCCAGTTTGAGCAGCA
NONE
OsAffx.11302.1.S1_at--253--3391Chr01:18786017..18786041 (25 bp)
CAGCCGCCCAGTTTGAGCAGCAGCA
NONE
OsAffx.11302.1.S1_at--576--3391Chr01:18786037..18786061 (25 bp)
CAGCAGGAGTTCAGTTTCATAGCAG
NONE
OsAffx.11302.1.S1_at--751--5011Chr01:18786039..18786063 (25 bp)
GCAGGAGTTCAGTTTCATAGCAGCA
NONE
OsAffx.11302.1.S1_at--517--3411Chr01:18786062..18786086 (25 bp)
CAGCAGCGGTTCACTTTCATTTCAG
NONE
OsAffx.11302.1.S1_at--367--1631Chr01:18786066..18786090 (25 bp)
AGCGGTTCACTTTCATTTCAGCAAC
NONE
OsAffx.11302.1.S1_at--609--7891Chr01:18786069..18786093 (25 bp)
GGTTCACTTTCATTTCAGCAACAGC
NONE
Target Sequence 
TTACGCCATGATATGTTGCAAGGAGTAGAAAAATGCATCAAGCTTGCCATGGATTCTGATGTTCATTATCCTACGTGGAC
TGATTTCAATGTCACAAATTGGGATATAAGCATACGATACTTGGCCAGGAAGAAGGATAGGACCTCAAGTGGACTATTCA
TAATAAAGTTCATCGAGTACTGGAATGGGGTGTGTCTGACTAAAACTTTTTTTCAGCACCAACAGCAGTACAGTTTCAGC
AGCAGCAGCATTACAGTTTCACCAGCAGCAGCAGCCGCCCAGTTTGAGCAGCAGCAGGAGTTCAGTTTCATAGCAGCAGC
AGCGGTTCACTTTCATTTCAGCAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis