Browse Element(s) Details


OsAffx.11307.1.S1_at

Description tigr:9629.m03180
TID=OsAffx.11307.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3391011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein
LOC_Os01g33950OsAffx.23501.1.S1_x_at11/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33950OsAffx.23501.2.S1_at9/111+18998075..19002520Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11307.1.S1_at--1094--2471Chr01:18979154..18979178 (25 bp)
AACACCATGGCCGTACGCATTGCGT
LOC_Os01g33910
OsAffx.11307.1.S1_at--1077--4931Chr01:18979170..18979194 (25 bp)
GCATTGCGTTCTTCTACAGGGTGAT
LOC_Os01g33910
OsAffx.11307.1.S1_at--139--5451Chr01:18979195..18979219 (25 bp)
GAACGGTTGTGGTGCACTGGCTTTC
LOC_Os01g33910
OsAffx.11307.1.S1_at--802--1931Chr01:18979210..18979234 (25 bp)
ACTGGCTTTCGCATGGGCCACGGTG
LOC_Os01g33910
OsAffx.11307.1.S1_at--326--8811Chr01:18979236..18979260 (25 bp)
TGTTGCTAGGTGGATACGCTACCCT
LOC_Os01g33910
OsAffx.11307.1.S1_at--940--311Chr01:18979249..18979273 (25 bp)
ATACGCTACCCTCATCAAACAGAAG
LOC_Os01g33910
OsAffx.11307.1.S1_at--1017--8571Chr01:18979280..18979304 (25 bp)
TGGTTCGTGACCATCATCGTCTTCA
LOC_Os01g33910
OsAffx.11307.1.S1_at--1054--5551Chr01:18979614..18979638 (25 bp)
GAAAGCCCACGCTCACAAGTGATAG
LOC_Os01g33910
OsAffx.11307.1.S1_at--323--5732Chr01:18979638..18979662 (25 bp)
GACTGATAGCGGACACACCTCTGGA
LOC_Os01g33910
OsAffx.11307.1.S1_at--10--9472Chr01:18979657..18979681 (25 bp)
TCTGGACTCCGATAACATATGCGTT
LOC_Os01g33910
OsAffx.11307.1.S1_at--44--2091Chr01:18979671..18979695 (25 bp)
ACATATGCGTTCGTTGTCGTTATCG
LOC_Os01g33910
Target Sequence 
AACACCATGGCCGTACGCATTGCGTTCTTCTACAGGGTGATGAACGGTTGTGGTGCACTGGCTTTCGCATGGGCCACGGT
GGTGTTGCTAGGTGGATACGCTACCCTCATCAAACAGAAGGATTTCTGGTTCGTGACCATCATCGTCTTCATGGAAGCAA
CCTGCCCAGGAAAGCCCACGCTCACAAGTGATAGACTGATAGCGGACACACCTCTGGACTCCGATAACATATGCGTTCGT
TGTCGTTATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis