Browse Element(s) Details


OsAffx.11412.1.S1_at

Description tigr:9629.m03876
TID=OsAffx.11412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4060011/11Cell cycle control protein cwf16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40620Os.26711.1.S1_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_s_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40620Os.26711.2.S1_x_at11/111+23275012..23279035Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g40630Os.11222.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.57185.1.S1_at11/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.11222.2.S1_x_at10/111+23281831..23285994Lysine Decarboxylase, putative, expressed
LOC_Os01g40630Os.54477.1.S1_at1/111+23281831..23285994Lysine Decarboxylase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11412.1.S1_at--282--9611Chr01:23256656..23256680 (25 bp)
TCATCAGCTCCATCGCGTTCGGCAA
LOC_Os01g40600
OsAffx.11412.1.S1_at--617--6711Chr01:23256672..23256696 (25 bp)
GTTCGGCAACGCGAAAGAGCGCAGC
LOC_Os01g40600
OsAffx.11412.1.S1_at--755--2771Chr01:23256686..23256710 (25 bp)
AAGAGCGCAGCCTCAGACGGATCGA
LOC_Os01g40600
OsAffx.11412.1.S1_at--681--6171Chr01:23256733..23256757 (25 bp)
GAGGAGGATTTCTTCGATTCGTGCC
LOC_Os01g40600
OsAffx.11412.1.S1_at--231--10631Chr01:23256745..23256769 (25 bp)
TTCGATTCGTGCCTGGCCAGAGCAG
LOC_Os01g40600
OsAffx.11412.1.S1_at--934--1712Chr01:23256778..23256802 (25 bp)
ACCACCAGCCACCAAGCAAAGAAGA
LOC_Os01g40600
OsAffx.11412.1.S1_at--194--4371Chr01:23256811..23256835 (25 bp)
CCACCGCCGCGAGATGCGGTTAAAT
LOC_Os01g40600
OsAffx.11412.1.S1_at--605--9131Chr01:23256825..23256849 (25 bp)
TGCGGTTAAATCGTTGGTCGTTTCG
LOC_Os01g40600
OsAffx.11412.1.S1_at--675--5291Chr01:23256857..23256881 (25 bp)
GAAGGCCAGAGAGCATGGATCAAGC
LOC_Os01g40600
OsAffx.11412.1.S1_at--622--831Chr01:23256871..23256895 (25 bp)
ATGGATCAAGCTGCATGGCCGCCGT
LOC_Os01g40600
OsAffx.11412.1.S1_at--119--5371Chr01:23256903..23256927 (25 bp)
GAAGACCACCGCGAGCAACGGTGCT
LOC_Os01g40600
Target Sequence 
TCATCAGCTCCATCGCGTTCGGCAACGCGAAAGAGCGCAGCCTCAGACGGATCGACGACGGCGACGACGAAGACGACGAG
GAGGATTTCTTCGATTCGTGCCTGGCCAGAGCAGCCATGGCCACCACCAGCCACCAAGCAAAGAAGAGGCCGCCGCCACC
GCCGCGAGATGCGGTTAAATCGTTGGTCGTTTCGAAGAAGAGAAGGCCAGAGAGCATGGATCAAGCTGCATGGCCGCCGT
CGTCGGGGAAGACCACCGCGAGCAACGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis