Browse Element(s) Details


OsAffx.11416.1.S1_at

Description tigr:9629.m03920
TID=OsAffx.11416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4102011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein
LOC_Os01g41000Os.35033.1.S1_x_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41000OsAffx.9169.1.S1_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41050OsAffx.29576.1.S1_at11/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050Os.27925.2.A1_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050OsAffx.29576.3.S1_x_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11416.1.S1_at--1008--9791Chr01:23554839..23554863 (25 bp)
TAAGCTCCTCGCCAAGTTTGTGTTA
LOC_Os01g41020
OsAffx.11416.1.S1_at--1114--3211Chr01:23555690..23556050 (25 bp)
CAAGTGGTCTAGAGTGGCAGCCCGT
LOC_Os01g41020
OsAffx.11416.1.S1_at--940--1091Chr01:23556043..23556062 (20 bp)
AGTGGCAGCCCGTGATTCAGAGCAG
LOC_Os01g41020
OsAffx.11416.1.S1_at--613--5011Chr01:23556059..23556083 (25 bp)
GCAGGCACAACACGGTCATTCATAT
LOC_Os01g41020
OsAffx.11416.1.S1_at--4--4411Chr01:23556088..23556112 (25 bp)
GCCAAAGTGGCTTGGGCTATACCCA
LOC_Os01g41020
OsAffx.11416.1.S1_at--25--9851Chr01:23556123..23556147 (25 bp)
TAAATGGTGTTTTACCCAGTGTGGA
LOC_Os01g41020
OsAffx.11416.1.S1_at--754--8151Chr01:23556724..23556748 (25 bp)
GGAAACCCAGAGTGGCCACCTATAG
LOC_Os01g41020
OsAffx.11416.1.S1_at--749--8691Chr01:23556775..23556799 (25 bp)
TGTGCTGAAGTTCTGCATCTTGCCC
LOC_Os01g41020
OsAffx.11416.1.S1_at--522--4531Chr01:23556796..23556820 (25 bp)
GCCCCAACCAGATTTTGTTCTCGTA
LOC_Os01g41020
OsAffx.11416.1.S1_at--806--6871Chr01:23556818..23556842 (25 bp)
GTATTTCAAAATGCCCTGCTACAGG
LOC_Os01g41020
OsAffx.11416.1.S1_at--659--2231Chr01:23557144..23557168 (25 bp)
AAATTAGGAACTCCCCATGTTGTAG
LOC_Os01g41020
Target Sequence 
TAAGCTCCTCGCCAAGTTTGTGTTAGGAACCCTAACGAGGAATCTCTCAATTAACTGGAATTACGATGATAATCAAGGAA
TTGGTGGGGTATCTGCAAGTGGTCTAGAGTGGCAGCCCGTGATTCAGAGCAGGCACAACACGGTCATTCATATTGATGCC
AAAGTGGCTTGGGCTATACCCATAGAGAACTTTAAATGGTGTTTTACCCAGTGTGGAGTGGTGGTAGGAAACCCAGAGTG
GCCACCTATAGGTGTGGCATGCAAAGCATCAATTACTTGTGCTGAAGTTCTGCATCTTGCCCCAACCAGATTTTGTTCTC
GTATTTCAAAATGCCCTGCTACAGGCCAGAGAGATGTTTCAGACTATGGTGGTCAGTCAAAATTAGGAACTCCCCATGTT
GTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis