Browse Element(s) Details


OsAffx.11508.1.S1_at

Description tigr:9629.m04570
TID=OsAffx.11508.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4761011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein
LOC_Os01g47580Os.15706.1.S1_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.1.S1_a_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.2.S1_x_at8/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47600Os.52073.1.S1_at11/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47600OsAffx.9317.1.S1_x_at7/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11508.1.S1_at--601--7131Chr01:27567661..27567685 (25 bp)
GTCTTCGTGGAGTGCCACGTCTTCA
LOC_Os01g47610
OsAffx.11508.1.S1_at--857--4651Chr01:27567567..27567591 (25 bp)
GCGTGCGGTCGTGGATCCCCTACTA
LOC_Os01g47610
OsAffx.11508.1.S1_at--4--8571Chr01:27567556..27567580 (25 bp)
TGGATCCCCTACTACGGTGGCTCCT
LOC_Os01g47610
OsAffx.11508.1.S1_at--921--4051Chr01:27567471..27567495 (25 bp)
CGATGTGCAGGTGGCTGCCGCACCT
LOC_Os01g47610
OsAffx.11508.1.S1_at--307--8491Chr01:27567460..27567484 (25 bp)
TGGCTGCCGCACCTGTACATCAACA
LOC_Os01g47610
OsAffx.11508.1.S1_at--611--2591Chr01:27567433..27567457 (25 bp)
AACGACTACATCTGCTGCTACTACA
LOC_Os01g47610
OsAffx.11508.1.S1_at--1091--9091Chr01:27567421..27567445 (25 bp)
TGCTGCTACTACAACGACGCGGCGG
LOC_Os01g47610
OsAffx.11508.1.S1_at--813--4531Chr01:27567261..27567285 (25 bp)
GCCCGACCAAGTTCTTGGAGGCGCA
LOC_Os01g47610
OsAffx.11508.1.S1_at--225--4391Chr01:27567255..27567279 (25 bp)
CCAAGTTCTTGGAGGCGCATGGGCT
LOC_Os01g47610
OsAffx.11508.1.S1_at--1013--1051Chr01:27567198..27567222 (25 bp)
AGGTGGCGCTCAACCACAGCAAGCT
LOC_Os01g47610
OsAffx.11508.1.S1_at--587--9611Chr01:27567174..27567198 (25 bp)
TCATCGACCGGCAGCTCAGGTCGCT
LOC_Os01g47610
Target Sequence 
GTCTTCGTGGAGTGCCACGTCTTCAACCCGCCGTCCGTGTCGCTGGCCATGAGCCTCAGGGGTTTCGCCGAGACCGCCGG
CGAGCTGTGGGGGCGCGTGCGGTCGTGGATCCCCTACTACGGTGGCTCCTCCTCCTCCTCCTCCCAGGCCGCGGACGCCG
GCGGCGGCGGCGAGAGCGAGGAGGCGAAGGCGATGTGCAGGTGGCTGCCGCACCTGTACATCAACACCAACGACTACATC
TGCTGCTACTACAACGACGCGGCGGCCGGGACGGCGACCGTGGCGGCCGGAGGAGGAGGAGGCGGGAGCGCGAGCGGCAA
GGCGGTGGCGGCGGCTGCGGCGGTGCGAGGGACCGGCGGCGGCGGCGCGCGCGTGGCGAGGATGCTGGTGGCGTCCAAGG
GCCCGACCAAGTTCTTGGAGGCGCATGGGCTGGAGCAGTGGTGGGCCGACGACGTCGAGCTGCAGGTGGCGCTCAACCAC
AGCAAGCTCATCGACCGGCAGCTCAGGTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis