Browse Element(s) Details


OsAffx.11516.2.S1_at

Description tigr:9629.m04649
TID=OsAffx.11516.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4831011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11516.2.S1_at--160--711Chr01:28009390..28009413 (24 bp)
ATGATGACTATGAGAGCCTAATAAG
LOC_Os01g48310
OsAffx.11516.2.S1_at--1030--5691Chr01:28009385..28009409 (25 bp)
GACTATGAGAGCCTAATAAGACTTG
LOC_Os01g48310
OsAffx.11516.2.S1_at--957--3691Chr01:28009045..28009331 (25 bp)
CTATCTGTAGTTGAGCTTGGCATCT
LOC_Os01g48310
OsAffx.11516.2.S1_at--653--9471Chr01:28009042..28009328 (25 bp)
TCTGTAGTTGAGCTTGGCATCTTCT
LOC_Os01g48310
OsAffx.11516.2.S1_at--1027--1231Chr01:28009037..28009208 (25 bp)
AGTTGAGCTTGGCATCTTCTCTGAA
LOC_Os01g48310
OsAffx.11516.2.S1_at--90--5931Chr01:28009033..28009056 (24 bp)
GAGCTTGGCATCTTCTCTGAATATC
LOC_Os01g48310
OsAffx.11516.2.S1_at--919--4931Chr01:28009031..28009055 (25 bp)
GCTTGGCATCTTCTCTGAATATCTG
LOC_Os01g48310
OsAffx.11516.2.S1_at--272--4971Chr01:28009026..28009050 (25 bp)
GCATCTTCTCTGAATATCTGCCTTC
LOC_Os01g48310
OsAffx.11516.2.S1_at--95--10591Chr01:28009021..28009045 (25 bp)
TTCTCTGAATATCTGCCTTCTCTTC
LOC_Os01g48310
OsAffx.11516.2.S1_at--678--9191Chr01:28009008..28009032 (25 bp)
TGCCTTCTCTTCCACAGTGCATTGA
LOC_Os01g48310
OsAffx.11516.2.S1_at--120--9531Chr01:28009003..28009027 (25 bp)
TCTCTTCCACAGTGCATTGACAAAT
LOC_Os01g48310
Target Sequence 
ATGATGACTATGAGAGCCTAATAAGACTTGATGACAACAACCATCACAGGGGTGCTTCTGACATTCAAATAAACAACCTG
CCACTATCTGTAGTTGAGCTTGGCATCTTCTCTGAATATCTGCCTTCTCTTCCACAGTGCATTGACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11516.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis