Browse Element(s) Details


OsAffx.11713.3.S1_at

Description tigr:9629.m06273
TID=OsAffx.11713.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6343011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63370OsAffx.11711.1.S1_at11/111+37052175..37053015hypothetical protein
LOC_Os01g63380OsAffx.11737.1.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.1.S1_x_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.2.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63389OsAffx.23902.2.S1_at11/111+37057557..37057880hypothetical protein
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein
LOC_Os01g63444Os.30588.4.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.4.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.1.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.5.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.2.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.3.S1_x_at10/111+37083746..37089766expressed protein
LOC_Os01g63460Os.42406.1.S1_at11/111+37090476..37092143myb family transcription factor, putative, expressed
LOC_Os01g63470Os.17214.1.S1_at11/111+37097867..37099284C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11713.3.S1_at--140--111Chr01:37078578..37078602 (25 bp)
ATTCGAATACGATCTGCACCAGCTT
LOC_Os01g63430
OsAffx.11713.3.S1_at--333--2631Chr01:37078493..37078517 (25 bp)
AACCTGAACTGTTTCTCCTTGATGC
LOC_Os01g63430
OsAffx.11713.3.S1_at--761--10771Chr01:37078475..37078499 (25 bp)
TTGATGCTTCTCGACAGCAGTGGCT
LOC_Os01g63430
OsAffx.11713.3.S1_at--322--7531Chr01:37078456..37078480 (25 bp)
GTGGCTTTTTTCAGACTGTTCTTCA
LOC_Os01g63430
OsAffx.11713.3.S1_at--404--8891Chr01:37078402..37078426 (25 bp)
TGAGGGCGACTTTCATTCATAGAAT
LOC_Os01g63430
OsAffx.11713.3.S1_at--261--10031Chr01:37077963..37078407 (25 bp)
TAGAATGCGCGATCAGGGAACCCCT
LOC_Os01g63430
OsAffx.11713.3.S1_at--24--8451Chr01:37077932..37077956 (25 bp)
GGCCAACTTTGTGCGCGGATGGTCA
LOC_Os01g63430
OsAffx.11713.3.S1_at--1079--3951Chr01:37077917..37077941 (25 bp)
CGGATGGTCATTGTCGCGGAAATTA
LOC_Os01g63430
OsAffx.11713.3.S1_at--506--6171Chr01:37077879..37077903 (25 bp)
GAGGATGCTGCACTTGGTTCTTCGC
LOC_Os01g63430
OsAffx.11713.3.S1_at--786--6631Chr01:37077845..37077869 (25 bp)
GTTGTTTTCTGCACACCTAGTGTTG
LOC_Os01g63430
OsAffx.11713.3.S1_at--799--6051Chr01:37077818..37077842 (25 bp)
GAGTCTTTGGGATGCCATTTTCATG
LOC_Os01g63430
Target Sequence 
ATTCGAATACGATCTGCACCAGCTTTCAAAAGCTGGAAAACAACTCGGGGCGCAATTTGGATCAGTTTCAAAAGACATGA
ACAGCAACCTGAACTGTTTCTCCTTGATGCTTCTCGACAGCAGTGGCTTTTTTCAGACTGTTCTTCAAACTACTCCACCA
AACAACCCAAACCACATGAGGGCGACTTTCATTCATAGAATGCGCGATCAGGGAACCCCTTCCCGTGGCCAACTTTGTGC
GCGGATGGTCATTGTCGCGGAAATTACTGGATCATGGTGGAGGATGCTGCACTTGGTTCTTCGCGGCGGCGCCGTTGTTT
TCTGCACACCTAGTGTTGATGAGTCTTTGGGATGCCATTTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11713.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis