Browse Element(s) Details


OsAffx.11730.1.S1_at

Description tigr:9629.m06396
TID=OsAffx.11730.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6458010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed
LOC_Os01g64580OsAffx.11730.1.S1_at10/111+37797022..37798512hypothetical protein
LOC_Os01g64590Os.12398.1.A1_at11/111+37799226..37800217Dof domain, zinc finger family protein, expressed
LOC_Os01g64600NANA1+37817580..37823734retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11730.1.S1_at--623--6671Chr01:37797059..37797399 (25 bp)
GTTGCCGAGTCCCATGTGTTCTATC
LOC_Os01g64580
OsAffx.11730.1.S1_at--725--6731Chr01:37797392..37797416 (25 bp)
GTTCTATCCCATTATCATCGCGAAA
LOC_Os01g64580
OsAffx.11730.1.S1_at--313--5111Chr01:37797432..37797456 (25 bp)
GCACTGACGGAGGATATGGCCATTT
LOC_Os01g64580
OsAffx.11730.1.S1_at--161--871Chr01:37797447..37797471 (25 bp)
ATGGCCATTTGTTTACGTCGTTCGA
LOC_Os01g64580
OsAffx.11730.1.S1_at--490--9851NONE
TACAATTTGATACTACAGGGACCCA
NONE
OsAffx.11730.1.S1_at--1070--7611Chr01:37798089..37798113 (25 bp)
GGGACCCAAGGACGTACAGTTCATT
LOC_Os01g64580
OsAffx.11730.1.S1_at--990--8991Chr01:37798115..37798139 (25 bp)
TGAAGATCACCACACAACTCACTTT
LOC_Os01g64580
OsAffx.11730.1.S1_at--988--2991Chr01:37798369..37798390 (22 bp)
AATGATAACATTCTACTGGCTGTAA
LOC_Os01g64580
OsAffx.11730.1.S1_at--275--9911Chr01:37798403..37798427 (25 bp)
TACTGAGTGACTACAAGTGGATCCA
LOC_Os01g64580
OsAffx.11730.1.S1_at--843--1091Chr01:37798418..37798442 (25 bp)
AGTGGATCCAGACGAGCAATCTCTA
LOC_Os01g64580
OsAffx.11730.1.S1_at--653--10111Chr01:37798458..37798482 (25 bp)
TATGAGCAGTCATGCCGAGACCAAT
LOC_Os01g64580
Target Sequence 
GTTGCCGAGTCCCATGTGTTCTATCCCATTATCATCGCGAAACCACAAGCCCTGCACGCACTGACGGAGGATATGGCCAT
TTGTTTACGTCGTTCGAGTACAATTTGATACTACAGGGACCCAAGGACGTACAGTTCATTCTGAAGATCACCACACAACT
CACTTTACAGCAACAGTTCAATGATAACATTCTACTGGCTGTAAAATCTAGAAAGATACTGAGTGACTACAAGTGGATCC
AGACGAGCAATCTCTATCTTTCAACAAGATATATGAGCAGTCATGCCGAGACCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis