Browse Element(s) Details


OsAffx.11840.1.S1_x_at

Description gb:NM_189397.1
DB_XREF= gi:34905877
GEN=P0458E05.15
TID=OsAffx.11840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0458E05.15 (P0458E05.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7348011/11acetyltransferase, GNAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11840.1.S1_x_at--876--5531Chr01:42909858..42909882 (25 bp)
GAAACTGGCTGAGATGCCTTTCGCA
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--493--1831Chr01:42909886..42909910 (25 bp)
ACGCTGCCAGCTTACCAGAAACAAG
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--391--2931Chr01:42909908..42909932 (25 bp)
AAGGAATGATGCGTCGCCTTGTCAA
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--850--8131Chr01:42910094..42910118 (25 bp)
GGAAAATCTAGTGATCCCGGCCGTC
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--107--8431Chr01:42910112..42910136 (25 bp)
GGCCGTCGCTGATCTAGTGGAAACC
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--543--8511Chr01:42910137..42910161 (25 bp)
TGGAAGAGATCCTTCTCCTTCAGGC
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--543--1452Chr08:22504734..22504762 (23 bp)
AGAAGCTGAGCTTGGTCGCCATCAC
NONE
OsAffx.11840.1.S1_x_at--898--9671Chr01:42910213..42910237 (25 bp)
TCACCGGGACGACGCTGCTGCAGAA
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--710--10651Chr01:42910267..42910291 (25 bp)
TTCCATCCCGGAAAGGTAGCAGCAG
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--1142--1851Chr01:42910387..42910411 (25 bp)
ACGACGAGCTGGCATTCCTGGAGAT
LOC_Os01g73480
OsAffx.11840.1.S1_x_at--599--91Chr01:42910400..42910424 (25 bp)
ATTCCTGGAGATGGCACCCTTGTGC
LOC_Os01g73480
Target Sequence 
GAAACTGGCTGAGATGCCTTTCGCAGGCACGCTGCCAGCTTACCAGAAACAAGGAATGATGCGTCGCCTTGTCAAGGCTG
TTGAAAAGGTGTTGGCGTCGTTGCAAGTGGAAAATCTAGTGATCCCGGCCGTCGCTGATCTAGTGGAAACCTGGAAGAGA
TCCTTCTCCTTCAGGCCAATGCAGGCAGAGGTCAGGGACGAAGCCAAGAAGCTGAGCTTGGTCGCCATCACCGGGACGAC
GCTGCTGCAGAAACCCATCTCTGCTCATCAGCAGCAACCAGTTCCATCCCGGAAAGGTAGCAGCAGCAGCAGAAGCAAGC
GCGCGTCTGCTCCGGCGACGGTCACCGGCAGCAGCAAGGAAGAGGAGGAGCAGATGACGACGACGGCGGCTCGCCTGACC
GACGACGAGCTGGCATTCCTGGAGATGGCACCCTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11840.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis