Browse Element(s) Details


OsAffx.11852.1.S1_at

Description gb:NM_188351.1
DB_XREF= gi:34903785
TID=OsAffx.11852.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0016I09.6 (OSJNBa0016I09.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1092011/11Peptide-N4-asparagine amidase A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11852.1.S1_at--852--3491Chr01:5823330..5823445 (25 bp)
CATGGCTATATGAAGCTCGCGAAGC
LOC_Os01g10920
OsAffx.11852.1.S1_at--1131--851Chr01:5823329..5823444 (25 bp)
ATGGCTATATGAAGCTCGCGAAGCT
LOC_Os01g10920
OsAffx.11852.1.S1_at--1152--8291Chr01:5823327..5823442 (25 bp)
GGCTATATGAAGCTCGCGAAGCTCG
LOC_Os01g10920
OsAffx.11852.1.S1_at--103--3691Chr01:5823325..5823440 (25 bp)
CTATATGAAGCTCGCGAAGCTCGGC
LOC_Os01g10920
OsAffx.11852.1.S1_at--442--10134Chr02:4427017..4427036 (20 bp)
TATGAAGCTCGCGAAGCTCGGCTCG
NONE
OsAffx.11852.1.S1_at--535--674Chr02:4427017..4427037 (21 bp)
ATGAAGCTCGCGAAGCTCGGCTCGG
NONE
OsAffx.11852.1.S1_at--614--3232Chr07:4740785..4740806 (22 bp)
CAACTCGTTTCCAAACCGAGCCGAG
NONE
OsAffx.11852.1.S1_at--1077--9994Chr02:4427107..4427378 (25 bp)
TAGCTCGCAAGCTGCTCGCGCCAGA
NONE
OsAffx.11852.1.S1_at--1058--1652Chr12:21540226..21540250 (25 bp)
AGCGCCGTTCGAAGCCCTCTCTGTG
NONE
OsAffx.11852.1.S1_at--443--9952Chr12:21540125..21540149 (25 bp)
TACCTCCCCTAGTGTGGCTGCGTCG
NONE
OsAffx.11852.1.S1_at--83--4313Chr12:21540118..21540142 (25 bp)
CCTAGTGTGGCTGCGTCGGCTCCGT
NONE
Target Sequence 
CATGGCTATATGAAGCTCGCGAAGCTCGGCTCGGCTCGAAGACTAAACGAGCCAAGCCCGAGCTCCCTCCACAACTCGTT
TCCAAACCGAGCCGAGCCCGAGCTAGCTCGCAAGCTGCTCGCGCCAGACCGCCAGCGGCAGGCCGGCAGCGCCGTTCGAA
GCCCTCTCTGTGCCGCCGCCGTCGGCCCGCCACCTCCCTTTCCTGCGCGGCTGCGCCATGGGCTCGCCGCCTCACTCCCT
GCGCCGCCTACCTCCCCTAGTGTGGCTGCGTCGGCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis