Browse Element(s) Details


OsAffx.11867.1.S1_x_at

Description tigr:9630.m00182
TID=OsAffx.11867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At1g76250
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0273011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02680NANA2+999809..1005369Leucine Rich Repeat family protein, expressed
LOC_Os02g02690Os.51108.1.S1_at5/112+1008675..1011816expressed protein
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11867.1.S1_x_at--969--7231Chr02:1033649..1033673 (25 bp)
GTCGCGCTGTCCAGGCTCTCGCTGA
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--218--5771Chr02:1033685..1033709 (25 bp)
GACGTCGCGGGCTACCAGGAGCTCA
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--585--7571Chr02:1033693..1033717 (25 bp)
GGGCTACCAGGAGCTCAACTCGGAG
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--1146--1551Chr02:1033704..1033728 (25 bp)
AGCTCAACTCGGAGGCGGCGTTCCA
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--379--911Chr02:1033716..1033740 (25 bp)
AGGCGGCGTTCCAGGCGCAGCTGAA
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--257--5071Chr02:1033732..1033756 (25 bp)
GCAGCTGAAGGTGGCCGGCGTCAAG
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--25--9191Chr02:1033773..1033797 (25 bp)
TGCCGTTCTGCGTGCTGAGCGACCG
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--1134--8911Chr02:1033788..1033812 (25 bp)
TGAGCGACCGGAGGTACTCGTTCCC
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--94--5811Chr02:1033969..1033993 (25 bp)
GACGCTGGAGATGTGCGACGCGAGC
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--513--4091Chr02:1033984..1034008 (25 bp)
CGACGCGAGCGTGCCGTGGGAGCAA
LOC_Os02g02730
OsAffx.11867.1.S1_x_at--243--4731Chr02:1034020..1034044 (25 bp)
GCTGTTTGACGAGGTCGCCGGCGAG
LOC_Os02g02730
Target Sequence 
GTCGCGCTGTCCAGGCTCTCGCTGATCCCTCGCCTCGACGTCGCGGGCTACCAGGAGCTCAACTCGGAGGCGGCGTTCCA
GGCGCAGCTGAAGGTGGCCGGCGTCAAGGCGAGGGAGCGGCGGCTGCCGTTCTGCGTGCTGAGCGACCGGAGGTACTCGT
TCCCGCCGGCGCCGTACGGCGTGCCCGTGGCGTCGCTGGGGAGCCCCGGCCCGCTGAGCGGCGCCAAGTGCCGGCCGTGC
CGGCCGGCGTGCCGCGGCGGCGAGTGCGCGTCGGCGGCGCGGCTGGTGCGCGGGTGGAGCTGGACGGAGTGGCGGAACGG
GACGCTGGAGATGTGCGACGCGAGCGTGCCGTGGGAGCAAGGGTGGGAGGCGCTGTTTGACGAGGTCGCCGGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11867.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis