Browse Element(s) Details


OsAffx.11868.1.S1_at

Description tigr:9630.m00184
TID=OsAffx.11868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0274011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11868.1.S1_at--120--3751Chr02:1037349..1037373 (25 bp)
CTCAACAGAAAAGATGTCCGCAGTT
LOC_Os02g02740
OsAffx.11868.1.S1_at--1127--2311Chr02:1037340..1037364 (25 bp)
AAAGATGTCCGCAGTTGTATGGTTT
LOC_Os02g02740
OsAffx.11868.1.S1_at--1127--6631Chr02:1037327..1037351 (25 bp)
GTTGTATGGTTTTCTGCTATCTCTA
LOC_Os02g02740
OsAffx.11868.1.S1_at--1074--8571Chr02:1037321..1037345 (25 bp)
TGGTTTTCTGCTATCTCTATATTTT
LOC_Os02g02740
OsAffx.11868.1.S1_at--333--2231Chr02:1037281..1037305 (25 bp)
ACAATTCATTTGTTCCCTTTTTGCA
LOC_Os02g02740
OsAffx.11868.1.S1_at--517--211Chr02:1037274..1037298 (25 bp)
ATTTGTTCCCTTTTTGCAGATCCAA
LOC_Os02g02740
OsAffx.11868.1.S1_at--299--6711Chr02:1037270..1037294 (25 bp)
GTTCCCTTTTTGCAGATCCAATATT
LOC_Os02g02740
OsAffx.11868.1.S1_at--749--2251Chr02:1036935..1036959 (25 bp)
AAATCTCAATTTCTGAAGGTCCATA
LOC_Os02g02740
OsAffx.11868.1.S1_at--1021--5311Chr02:1036921..1036945 (25 bp)
GAAGGTCCATATGGTCCATCTGTAG
LOC_Os02g02740
OsAffx.11868.1.S1_at--318--7271Chr02:1036908..1036932 (25 bp)
GTCCATCTGTAGGAGACATTAAGCT
LOC_Os02g02740
OsAffx.11868.1.S1_at--544--1551Chr02:1036887..1036911 (25 bp)
AGCTTTTAGTAAACTGACTGTTGTC
LOC_Os02g02740
Target Sequence 
CTCAACAGAAAAGATGTCCGCAGTTGTATGGTTTTCTGCTATCTCTATATTTTAAATACCTAGCTAGCACAATTCATTTG
TTCCCTTTTTGCAGATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTT
GTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGTCAGGGTTTGCCTT
TTTTGAGACGGAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTG
TACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGTTTTCCTGTAAATGTC
TGAATAAATCATCCAAATCTCAATTTCTGAAGGTCCATATGGTCCATCTGTAGGAGACATTAAGCTTTTAGTAAACTGAC
TGTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis