Browse Element(s) Details


OsAffx.11956.1.S1_at

Description tigr:9630.m00863
TID=OsAffx.11956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY061923 AT5g67300K8K14_2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0948011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09450Os.5603.1.S1_at11/112+4847748..4852501Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os02g09460Os.4729.1.S1_at11/112+4855962..4859043expressed protein
LOC_Os02g09470Os.4625.1.S1_at11/112+4859719..4862762expressed protein
LOC_Os02g09480OsAffx.11956.1.S1_at11/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09480Os.54569.1.S1_x_at1/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09490Os.8684.1.S1_a_at11/112+4870146..4874079Cinnamyl-alcohol dehydrogenase, putative, expressed
LOC_Os02g09500OsAffx.2552.1.S1_at11/112+4879066..4879437hypothetical protein
LOC_Os02g09510Os.12550.1.S1_s_at11/112+4888510..4890156UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11956.1.S1_at--671--7431Chr02:4868108..4868132 (25 bp)
GTGTAAGCGCGTGAGCCCCGGGCCG
LOC_Os02g09480
OsAffx.11956.1.S1_at--951--5751Chr02:4868141..4868165 (25 bp)
GACGGGATCGGAGCGCAGCGAGCTC
LOC_Os02g09480
OsAffx.11956.1.S1_at--238--7911Chr02:4868350..4868374 (25 bp)
GGTTCCACCACGACAGCGCGCGGAG
LOC_Os02g09480
OsAffx.11956.1.S1_at--23--4551Chr02:4868365..4868389 (25 bp)
GCGCGCGGAGCCACTTCCAGGAGCT
LOC_Os02g09480
OsAffx.11956.1.S1_at--725--551Chr02:4868444..4868468 (25 bp)
ATCCGCATACCCGTTCAACGCCGAT
LOC_Os02g09480
OsAffx.11956.1.S1_at--693--6031Chr02:4868487..4868511 (25 bp)
GAGATGATCCGCACGGAAGTCCGCA
LOC_Os02g09480
OsAffx.11956.1.S1_at--365--8851Chr02:4868491..4868515 (25 bp)
TGATCCGCACGGAAGTCCGCAACTA
LOC_Os02g09480
OsAffx.11956.1.S1_at--709--1931Chr02:4868499..4868523 (25 bp)
ACGGAAGTCCGCAACTACATGGCCG
LOC_Os02g09480
OsAffx.11956.1.S1_at--16--2851Chr02:4868503..4868527 (25 bp)
AAGTCCGCAACTACATGGCCGGCGT
LOC_Os02g09480
OsAffx.11956.1.S1_at--289--9271Chr02:4868506..4868530 (25 bp)
TCCGCAACTACATGGCCGGCGTCGG
LOC_Os02g09480
OsAffx.11956.1.S1_at--1125--8391Chr02:4868553..4868577 (25 bp)
GGCGCCGTGGCCGAGTCCTTCATGC
LOC_Os02g09480
Target Sequence 
GTGTAAGCGCGTGAGCCCCGGGCCGGGGAGCCCGACGGGATCGGAGCGCAGCGAGCTCAGCCACGGCGGCTGCGGAAGCG
GAAGCGGCGGCGGGCAGGTGTTCCGCCCCGTGCCGCGCCCCGGCGGCTTCGACGCCATCAGCGCGGCGGACGTCGTGCGG
CCGCCGCGGCGGCGGGACGACAACGACGACGACGGCGACGACGACCCGCTCACCTCGCTGTCCCTCTCCCTCTCCCTCCC
GGGGTTCCACCACGACAGCGCGCGGAGCCACTTCCAGGAGCTCCCCTCCCCCTCCCGCTCCCCTTCGCCGCCGCCGTCGC
CGCCGGCAGCATCTCCATCCGCATACCCGTTCAACGCCGATCTCGTCTCCGCGATGCAGGAGATGATCCGCACGGAAGTC
CGCAACTACATGGCCGGCGTCGGGCTCCGCGCCGGCTGCGGCCCGGGCGCCGTGGCCGAGTCCTTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis