Browse Element(s) Details


OsAffx.1199.1.S1_at

Description gb:NM_189123.1
DB_XREF= gi:34905329
GEN=OJ9990_A01.13
TID=OsAffx.1199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ9990_A01.13 (OJ9990_A01.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g066901/11hypothetical protein
LOC_Os08g067201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1199.1.S1_at--261--9271Chr08:3740414..3740438 (25 bp)
TCCTCGCCAGCGAAGACGATCAACG
NONE
OsAffx.1199.1.S1_at--833--9411Chr08:3740660..3740684 (25 bp)
TCGTCCTGCTGCACGACAAGTACGA
NONE
OsAffx.1199.1.S1_at--741--4851Chr08:3740691..3740715 (25 bp)
GCTACCTGCGCGTCAACGAGAGGTG
NONE
OsAffx.1199.1.S1_at--524--9711Chr08:3740703..3740727 (25 bp)
TCAACGAGAGGTGGCTCCCGTGCCT
NONE
OsAffx.1199.1.S1_at--291--652Chr08:3740771..3740795 (25 bp)
ATGCAGTGGGAGGTGCTTCCCGTCC
NONE
OsAffx.1199.1.S1_at--100--4371Chr08:3740796..3740820 (25 bp)
CCACAACTCTCTTCAGGCGAGACAT
NONE
OsAffx.1199.1.S1_at--134--9631Chr08:3740808..3740832 (25 bp)
TCAGGCGAGACATCCCGGCCATGGG
NONE
OsAffx.1199.1.S1_at--731--8431Chr08:3740824..3740848 (25 bp)
GGCCATGGGCCATGTGAGCTCCTCC
NONE
OsAffx.1199.1.S1_at--159--3772Chr08:3740859..3740883 (25 bp)
CTCTCTTCTTGCGATTCTTGAACTC
NONE
OsAffx.1199.1.S1_at--684--9131Chr08:3740868..3740892 (25 bp)
TGCGATTCTTGAACTCGTTTGCGCC
NONE
OsAffx.1199.1.S1_at--1007--1991Chr08:3740880..3740904 (25 bp)
ACTCGTTTGCGCCAAAGATTATATC
NONE
Target Sequence 
TCCTCGCCAGCGAAGACGATCAACGCCGAGGCCGAGGGCGGCGACGGCGTCCTCCTCCCGGGCCACGTGCTCCTCCGCGG
CGCCTACGGCCGCTATCTCGGTGCCCCCGACGCCATCAGCCACTTCTGGGCGCGCCCTTCTGCTTCTGGCCCGCCGCCGG
GCAGCGCGACTTCGACAGGGAGGAGGTGAGGTCGACGCCATCATGTGGCGTGCCGTCGGGCTGGGCGCCGGCGGCTGGCG
ACGGCGTCGTCCTGCTGCACGACAAGTACGACCGCGCGCTACCTGCGCGTCAACGAGAGGTGGCTCCCGTGCCTCGCCGG
CGTCGCGGCCTTCAACGACGGCGACCTCAACATCCCGATGCAGTGGGAGGTGCTTCCCGTCCCCACAACTCTCTTCAGGC
GAGACATCCCGGCCATGGGCCATGTGAGCTCCTCCTCCTCGTCCCCTCTCTTCTTGCGATTCTTGAACTCGTTTGCGCCA
AAGATTATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis