Browse Element(s) Details


OsAffx.12150.1.S1_at

Description tigr:9630.m02081
TID=OsAffx.12150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g216907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21650Os.52450.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21650Os.53107.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21660Os.8864.1.S1_at11/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21660Os.11487.1.S1_s_at1/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21670NANA2+12876888..12878874hypothetical protein
LOC_Os02g21680OsAffx.24374.1.S1_at11/112+12885455..12886276hypothetical protein
LOC_Os02g21690OsAffx.12150.1.S1_at7/112+12887926..12888210hypothetical protein
LOC_Os02g21700OsAffx.12151.1.S1_at11/112+12893454..12895429Protein kinase domain containing protein, expressed
LOC_Os02g21710OsAffx.2709.1.S1_at11/112+12907605..12908006Ras-related protein Rab-2-B, putative
LOC_Os02g21720OsAffx.23366.2.S1_s_at1/112+12908783..12912373transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12150.1.S1_at--1139--5391Chr02:12887948..12887972 (25 bp)
GAAGCTGCCGTGATGAAGCCGCTGA
LOC_Os02g21690
OsAffx.12150.1.S1_at--757--1831Chr02:12887990..12888014 (25 bp)
ACGCTGACGACGAAGCCGTGGATGA
LOC_Os02g21690
OsAffx.12150.1.S1_at--517--4391Chr02:12888037..12888061 (25 bp)
GCCAATAGCGCGGTGTTGTTCACGA
LOC_Os02g21690
OsAffx.12150.1.S1_at--1024--4671Chr02:12888046..12888070 (25 bp)
GCGGTGTTGTTCACGACGGTCAGCA
LOC_Os02g21690
OsAffx.12150.1.S1_at--343--8932Chr02:27849477..27849501 (25 bp)
TGACGGAGTTAAGCCTCTGGATCGT
NONE
OsAffx.12150.1.S1_at--920--8531Chr02:12888115..12888139 (25 bp)
TGGATCGTGTCACCCCAATCGGAGG
LOC_Os02g21690
OsAffx.12150.1.S1_at--64--8031Chr02:12888135..12888159 (25 bp)
GGAGGTCATGAAACCCGAGCCGCAA
LOC_Os02g21690
OsAffx.12150.1.S1_at--202--4791NONE
GCTCCCTGCCGCAAATTATTATTCT
NONE
OsAffx.12150.1.S1_at--66--2271Chr02:12888712..12888736 (25 bp)
AAATACTTGCCGTGTGGATGCCAGG
NONE
OsAffx.12150.1.S1_at--329--7671Chr02:12888735..12888759 (25 bp)
GGGATAACTGTTTCAGCTGCAGGAT
NONE
OsAffx.12150.1.S1_at--948--5011Chr02:12888753..12888777 (25 bp)
GCAGGATATATGTACGATGTCTTCT
NONE
Target Sequence 
GAAGCTGCCGTGATGAAGCCGCTGAGATCGGTGGCGAGCTAGACGCTGACGACGAAGCCGTGGATGAAGAGGAGTTCGTC
GGGGACCGCGCCAATAGCGCGGTGTTGTTCACGACGGTCAGCAGGGGAAGCGACGGTGACGATGCGGCGGTGACGGAGTT
AAGCCTCTGGATCGTGTCACCCCAATCGGAGGTCATGAAACCCGAGCCGCAACCGCTCCCTGCCGCAAATTATTATTCTA
ATGCGGCGCGGTGTCCATTGGCAAATTACCATGTCTATGAAGTGTTTTCCCCCAAAACTGAAATACTTGCCGTGTGGATG
CCAGGGATAACTGTTTCAGCTGCAGGATATATGTACGATGTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis