Browse Element(s) Details


Os.53107.1.S1_at

Description gb:AK070852.1
DB_XREF= gi:32980875
TID=Os.53107.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065A17, full insert sequence.
FL= gb:AK070852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2165011/11B-cell receptor-associated protein 31-like containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21610NANA2+12834633..12835142hypothetical protein
LOC_Os02g21620OsAffx.22467.1.S1_x_at4/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.30891.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.22467.1.S1_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.5.S1_x_at2/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.535.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.1.S1_x_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.7216.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.2.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21630Os.52016.1.A1_at11/112+12846467..12851439SEC14 cytosolic factor, putative, expressed
LOC_Os02g21640Os.18455.1.S1_at11/112+12852007..12852957expressed protein
LOC_Os02g21650Os.52450.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21650Os.53107.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21660Os.8864.1.S1_at11/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21660Os.11487.1.S1_s_at1/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21670NANA2+12876888..12878874hypothetical protein
LOC_Os02g21680OsAffx.24374.1.S1_at11/112+12885455..12886276hypothetical protein
LOC_Os02g21690OsAffx.12150.1.S1_at7/112+12887926..12888210hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53107.1.S1_at--438--5611Chr02:12863589..12863613 (25 bp)
GACAAGGCTCTTGCTATTCGGAAAC
LOC_Os02g21650
Os.53107.1.S1_at--874--8151Chr02:12863608..12863632 (25 bp)
GGAAACAATCTGAAAGCCTGCTGCT
LOC_Os02g21650
Os.53107.1.S1_at--707--9111Chr02:12863626..12863650 (25 bp)
TGCTGCTTGAGTATGACCGTTTGCT
LOC_Os02g21650
Os.53107.1.S1_at--85--8551Chr02:12863650..12863674 (25 bp)
TGGAGGACAACCAGCATCTCCGGGA
LOC_Os02g21650
Os.53107.1.S1_at--511--7631Chr02:12863671..12863695 (25 bp)
GGGAGCAGCTGCAGTCAATTGACCA
LOC_Os02g21650
Os.53107.1.S1_at--581--1171Chr02:12863683..12863707 (25 bp)
AGTCAATTGACCACAGGCTCTCCAG
LOC_Os02g21650
Os.53107.1.S1_at--140--3151Chr02:12863839..12863863 (25 bp)
AATTCCTGGCGGTAAAATCATTTGG
LOC_Os02g21650
Os.53107.1.S1_at--905--631Chr02:12863882..12863906 (25 bp)
ATGCTTTTAGCAGTATTCTCCCTTA
LOC_Os02g21650
Os.53107.1.S1_at--634--5031Chr02:12863891..12863915 (25 bp)
GCAGTATTCTCCCTTATCAGTTTTA
LOC_Os02g21650
Os.53107.1.S1_at--1143--4191Chr02:12863949..12863973 (25 bp)
CCCGTAGGTAAGTTCGAGCATCATA
LOC_Os02g21650
Os.53107.1.S1_at--267--7091Chr02:12863976..12864000 (25 bp)
GTCAAGCACTTTACAATTTTTCCAT
LOC_Os02g21650
Target Sequence 
GACAAGGCTCTTGCTATTCGGAAACAATCTGAAAGCCTGCTGCTTGAGTATGACCGTTTGCTGGAGGACAACCAGCATCT
CCGGGAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGTTCAAGTGTAATATTTTTTTTTCCTATGGG
ATTGGAGAACCTAGTCAATATATTGCTGCAGAAAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAG
AATACCAAGAAATTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTATTCTCCCTTATC
AGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGTAAGTTCGAGCATCATATTGTCAAGCACTTTA
CAATTTTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis