Browse Element(s) Details


Os.8864.1.S1_at

Description gb:AK102574.1
DB_XREF= gi:32987783
TID=Os.8864.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097O05, full insert sequence.
FL= gb:AK062103.1 gb:AK102574.1 gb:AK058256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2166011/1160S ribosomal protein L10a-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21620OsAffx.22467.1.S1_x_at4/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.30891.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.22467.1.S1_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.5.S1_x_at2/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.535.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.1.S1_x_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.7216.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.2.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21630Os.52016.1.A1_at11/112+12846467..12851439SEC14 cytosolic factor, putative, expressed
LOC_Os02g21640Os.18455.1.S1_at11/112+12852007..12852957expressed protein
LOC_Os02g21650Os.52450.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21650Os.53107.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21660Os.8864.1.S1_at11/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21660Os.11487.1.S1_s_at1/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21670NANA2+12876888..12878874hypothetical protein
LOC_Os02g21680OsAffx.24374.1.S1_at11/112+12885455..12886276hypothetical protein
LOC_Os02g21690OsAffx.12150.1.S1_at7/112+12887926..12888210hypothetical protein
LOC_Os02g21700OsAffx.12151.1.S1_at11/112+12893454..12895429Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8864.1.S1_at--253--3271Chr02:12871762..12871786 (25 bp)
CAACTCTGGTGACGCATCAGGAATC
LOC_Os02g21660
Os.8864.1.S1_at--214--5391Chr02:12871886..12871910 (25 bp)
GAAGCAGATCTTCCAAAATGTGCAG
LOC_Os02g21660
Os.8864.1.S1_at--814--1031Chr02:12872100..12872124 (25 bp)
AGGTGTACCGAGTGTTCTAAGTTAT
LOC_Os02g21660
Os.8864.1.S1_at--395--4851Chr02:12872174..12872198 (25 bp)
GCTACTTTCCCAGTCATCAAATTTT
LOC_Os02g21660
Os.8864.1.S1_at--623--3171Chr02:12872232..12872256 (25 bp)
AATTGTCCTGTACTAAGTTGCCTCT
LOC_Os02g21660
Os.8864.1.S1_at--1142--9171Chr02:12872250..12872274 (25 bp)
TGCCTCTCTCTTTGGTTGAACATCA
LOC_Os02g21660
Os.8864.1.S1_at--471--2091Chr02:12872269..12872293 (25 bp)
ACATCATTACATTTTATCCATCGAG
LOC_Os02g21660
Os.8864.1.S1_at--370--10431Chr02:12872282..12872306 (25 bp)
TTATCCATCGAGATCATTCTGTGAT
LOC_Os02g21660
Os.8864.1.S1_at--129--691Chr02:12872305..12872329 (25 bp)
ATGACCCAAAATCCTGCTGTGCAGA
LOC_Os02g21660
Os.8864.1.S1_at--931--4711Chr02:12872320..12872344 (25 bp)
GCTGTGCAGACCTTTTATTGTCCTG
LOC_Os02g21660
Os.8864.1.S1_at--977--7251Chr02:12872339..12872363 (25 bp)
GTCCTGATCTTTATTAGTCTTAGCA
LOC_Os02g21660
Target Sequence 
CAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTAATGAGACTAAGGCTACAGTGAAATTCCAGCTGAAGAAG
GTTCTCTGCATGGGTGTTGCTGTTGGCAACTGTGCTATGGAGGAGAAGCAGATCTTCCAAAATGTGCAGATGAGCGTGAA
CTTCCTTGTTTCCCTTTTGAAGAAGAATTGGCAGAACGTTAGGTGCTTGTACCTGAAGAGCACCATGGGAAAGGTGTACC
GAGTGTTCTAAGTTATTTTCTTTAGGCTTCTAGATGTTTTGGAGACTAAGCTACTTGAAACTTTTGCTACTTTCCCAGTC
ATCAAATTTTGTGCAACAGCTGAGGATTAAGGAATTCGGANTTAATTGTCCTGTACTAAGTTGCCTCTCTCTTTGGTTGA
ACATCATTACATTTTATCCATCGAGATCATTCTGTGATGACCCAAAATCCTGCTGTGCAGACCTTTTATTGTCCTGATCT
TTATTAGTCTTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis