Browse Element(s) Details


OsAffx.12151.1.S1_at

Description tigr:9630.m02082
TID=OsAffx.12151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2170011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21660Os.8864.1.S1_at11/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21660Os.11487.1.S1_s_at1/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21670NANA2+12876888..12878874hypothetical protein
LOC_Os02g21680OsAffx.24374.1.S1_at11/112+12885455..12886276hypothetical protein
LOC_Os02g21690OsAffx.12150.1.S1_at7/112+12887926..12888210hypothetical protein
LOC_Os02g21700OsAffx.12151.1.S1_at11/112+12893454..12895429Protein kinase domain containing protein, expressed
LOC_Os02g21710OsAffx.2709.1.S1_at11/112+12907605..12908006Ras-related protein Rab-2-B, putative
LOC_Os02g21720OsAffx.23366.2.S1_s_at1/112+12908783..12912373transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730Os.45173.1.S1_x_at4/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730Os.46314.3.S1_at2/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730OsAffx.7362.1.S1_x_at1/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21740OsAffx.9790.1.S1_x_at1/112+12919172..12921972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21740OsAffx.8338.1.S1_x_at1/112+12919172..12921972retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12151.1.S1_at--463--8571Chr02:12894327..12894351 (25 bp)
TGGTTCTCCGCCGAAGGGAAGGACT
LOC_Os02g21700
OsAffx.12151.1.S1_at--1059--3631Chr02:12894350..12894374 (25 bp)
CTTCCTGGCGAGGTGTTTGATCAGA
LOC_Os02g21700
OsAffx.12151.1.S1_at--726--551Chr02:12894437..12894461 (25 bp)
ATCCGATTCCACATCCAAGGCCGTG
LOC_Os02g21700
OsAffx.12151.1.S1_at--511--9051Chr02:12894460..12894484 (25 bp)
TGCAGATCGAGCAGCGCGTTTCCCC
LOC_Os02g21700
OsAffx.12151.1.S1_at--1111--2771Chr02:12894486..12894510 (25 bp)
AAGAGCATCCTCGACCAGTGCCTGT
LOC_Os02g21700
OsAffx.12151.1.S1_at--148--1131Chr02:12894502..12894526 (25 bp)
AGTGCCTGTGGGAGTCCACCTCGAC
LOC_Os02g21700
OsAffx.12151.1.S1_at--539--4231Chr02:12894601..12894625 (25 bp)
CCGACTGGACCTGGAGCATGGACGA
LOC_Os02g21700
OsAffx.12151.1.S1_at--941--10551Chr02:12894702..12894726 (25 bp)
TTCTTCCGCGGCGATGAGGCTTCGT
LOC_Os02g21700
OsAffx.12151.1.S1_at--451--691Chr02:12894715..12894739 (25 bp)
ATGAGGCTTCGTCAGACCTTGTCTT
LOC_Os02g21700
OsAffx.12151.1.S1_at--250--7911Chr02:12895336..12895360 (25 bp)
GGTTGCGGCCACTGTGCCATTGATG
LOC_Os02g21700
OsAffx.12151.1.S1_at--1023--6531Chr02:12895375..12895399 (25 bp)
GATTACGGGAGTTGAACGGTCGATC
LOC_Os02g21700
Target Sequence 
TGGTTCTCCGCCGAAGGGAAGGACTTCCTGGCGAGGTGTTTGATCAGAGACCCAGCCAAGCGGTGGACGGCGGAGCAGCT
GCTCGAGCACCCGTTCGTCGCCTCCGCGGCATCCGATTCCACATCCAAGGCCGTGCAGATCGAGCAGCGCGTTTCCCCCA
AGAGCATCCTCGACCAGTGCCTGTGGGAGTCCACCTCGACGGACTCCGACGCCACGGTGGCGCTCGCCCCCGCCGACCGT
CTCCGCGCATTGTCCGCCGGCGCGTCCGTCGCGCCCGACTGGACCTGGAGCATGGACGACTGGATCGCCGTCTGCGGCGG
CCGCGCCGACGACCACGACACCACGCCGTCGCCACAACCCGACACCACCACCAGCTTCTTCCGCGGCGATGAGGCTTCGT
CAGACCTTGTCTTCCCCGGAGGCGGTGAGACTGAGAGAGGCGCCGTTGCGGTTGCGGCCACTGTGCCATTGATGGCGAAA
AGCAGCGAGATTACGGGAGTTGAACGGTCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis