Browse Element(s) Details


OsAffx.24374.1.S1_at

Description tigr:9630.m02080
TID=OsAffx.24374.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2168011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21650Os.52450.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21650Os.53107.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21660Os.8864.1.S1_at11/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21660Os.11487.1.S1_s_at1/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21670NANA2+12876888..12878874hypothetical protein
LOC_Os02g21680OsAffx.24374.1.S1_at11/112+12885455..12886276hypothetical protein
LOC_Os02g21690OsAffx.12150.1.S1_at7/112+12887926..12888210hypothetical protein
LOC_Os02g21700OsAffx.12151.1.S1_at11/112+12893454..12895429Protein kinase domain containing protein, expressed
LOC_Os02g21710OsAffx.2709.1.S1_at11/112+12907605..12908006Ras-related protein Rab-2-B, putative
LOC_Os02g21720OsAffx.23366.2.S1_s_at1/112+12908783..12912373transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24374.1.S1_at--183--2451Chr02:12886170..12886194 (25 bp)
AACAACCAGAGGACGCAGGGTGGCA
LOC_Os02g21680
OsAffx.24374.1.S1_at--1116--1051Chr02:12886159..12886178 (20 bp)
AGGGTGGCAGATACGGCCTGCACCT
LOC_Os02g21680
OsAffx.24374.1.S1_at--461--4451Chr02:12885793..12885813 (21 bp)
GCCTGCACCTGCACAGGAAAAACAC
LOC_Os02g21680
OsAffx.24374.1.S1_at--1036--2411Chr02:12885775..12885799 (25 bp)
AAAACACAGATCTTCACGTGCGGGT
LOC_Os02g21680
OsAffx.24374.1.S1_at--45--1292Chr04:33130680..33131045 (25 bp)
AGATCTTCACGTGCGGGTGAGCCAC
NONE
OsAffx.24374.1.S1_at--762--7751Chr02:12885753..12885777 (25 bp)
GGTGAGCCACCGCATGAAAATATTG
LOC_Os02g21680
OsAffx.24374.1.S1_at--676--4871Chr02:12885729..12885753 (25 bp)
GCTATTTTCGTAGACATCTCCGGGA
LOC_Os02g21680
OsAffx.24374.1.S1_at--785--7611Chr02:12885652..12885732 (25 bp)
GGGAAGATGCAGTGCCACCTATCAT
LOC_Os02g21680
OsAffx.24374.1.S1_at--884--1231Chr02:12885609..12885633 (25 bp)
AGTTGCCTCTCACTCTCATGGTGAA
LOC_Os02g21680
OsAffx.24374.1.S1_at--341--3511Chr02:12885593..12885617 (25 bp)
CATGGTGAACCTAGAGCTTGAGCTC
LOC_Os02g21680
OsAffx.24374.1.S1_at--543--931Chr02:12885519..12885543 (25 bp)
AGGCACGTGGAGAACATGACAGTGA
LOC_Os02g21680
Target Sequence 
AACAACCAGAGGACGCAGGGTGGCAGATACGGCCTGCACCTGCACAGGAAAAACACAGATCTTCACGTGCGGGTGAGCCA
CCGCATGAAAATATTGCTATTTTCGTAGACATCTCCGGGAAGATGCAGTGCCACCTATCATCTCTCCCGTCTCTCTCCAA
GTTGCCTCTCACTCTCATGGTGAACCTAGAGCTTGAGCTCATTTGTGCAAAGCTATTGAAGGAGGAGGCAGTGGAGCTTG
AGAATGAGGAGGCACGTGGAGAACATGACAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis