Browse Element(s) Details


Os.18455.1.S1_at

Description gb:AK108146.1
DB_XREF= gi:32993355
TID=Os.18455.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-F04, full insert sequence.
FL= gb:AK108146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2164011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21590OsAffx.32056.1.S1_x_at6/112+12820861..12827682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21590OsAffx.32056.1.S1_at3/112+12820861..12827682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.2.S1_at4/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.3.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.4.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.1.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21610NANA2+12834633..12835142hypothetical protein
LOC_Os02g21620OsAffx.22467.1.S1_x_at4/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.30891.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.22467.1.S1_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.5.S1_x_at2/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.535.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.1.S1_x_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.7216.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.2.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21630Os.52016.1.A1_at11/112+12846467..12851439SEC14 cytosolic factor, putative, expressed
LOC_Os02g21640Os.18455.1.S1_at11/112+12852007..12852957expressed protein
LOC_Os02g21650Os.52450.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21650Os.53107.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21660Os.8864.1.S1_at11/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21660Os.11487.1.S1_s_at1/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21670NANA2+12876888..12878874hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18455.1.S1_at--647--8871Chr02:12852401..12852425 (25 bp)
TGATGGGCGTCAAGTGCCAGCTGCC
LOC_Os02g21640
Os.18455.1.S1_at--894--4671Chr02:12852426..12852450 (25 bp)
GCGGTTCAGCGGGATGATACTGTAC
LOC_Os02g21640
Os.18455.1.S1_at--985--8831Chr02:12852440..12852464 (25 bp)
TGATACTGTACGACGAGCGTGGCCG
LOC_Os02g21640
Os.18455.1.S1_at--91--4051Chr02:12852672..12852696 (25 bp)
CGATCATGGTGCTGAGGGACATGCT
LOC_Os02g21640
Os.18455.1.S1_at--335--7731Chr02:12852751..12852775 (25 bp)
GGTGGCGATAGATCTTCTTCATCCC
LOC_Os02g21640
Os.18455.1.S1_at--91--8771Chr02:12852778..12852802 (25 bp)
TGCTTTCCTGTTTCAGTTAACCGGT
LOC_Os02g21640
Os.18455.1.S1_at--315--9811Chr02:12852795..12852819 (25 bp)
TAACCGGTCGATATGTGTGTACATC
LOC_Os02g21640
Os.18455.1.S1_at--913--411Chr02:12852817..12852841 (25 bp)
ATCTTTTTGTTTCATGGGTTGTCCA
LOC_Os02g21640
Os.18455.1.S1_at--300--791Chr02:12852830..12852854 (25 bp)
ATGGGTTGTCCATTTGGCCGACTAC
LOC_Os02g21640
Os.18455.1.S1_at--687--9931Chr02:12852852..12852876 (25 bp)
TACGTCGTCTGTCTCAGTAGTGATC
LOC_Os02g21640
Os.18455.1.S1_at--475--9631Chr02:12852875..12852899 (25 bp)
TCAGTAGCTACTAGCCAGGAGCCCA
LOC_Os02g21640
Target Sequence 
TGATGGGCGTCAAGTGCCAGCTGCCGCGGTTCAGCGGGATGATACTGTACGACGAGCGTGGCCGACCGGTGTGCAGCGGC
GTCCGGGACAGGGCGCGCGACAAGGAAAAGCACGCGGCGGCGATCATGGTGCTGAGGGACATGCTCTAGCCTCTTGGCCC
CTAGCTCGCCGGCCGGCCGGCCGGCCACTCGCCGTCCCCGGTGGCGATAGATCTTCTTCATCCCTCTGCTTTCCTGTTTC
AGTTAACCGGTCGATATGTGTGTACATCTTTTTGTTTCATGGGTTGTCCATTTGGCCGACTACGTCGTCTGTCTCAGTAG
TGATCAGTAGCTACTAGCCAGGAGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis