Browse Element(s) Details


Os.52016.1.A1_at

Description gb:AK064540.1
DB_XREF= gi:32974558
TID=Os.52016.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A04, full insert sequence.
FL= gb:AK064540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2163011/11SEC14 cytosolic factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21590OsAffx.32056.1.S1_x_at6/112+12820861..12827682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21590OsAffx.32056.1.S1_at3/112+12820861..12827682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.2.S1_at4/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.3.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.4.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.1.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21610NANA2+12834633..12835142hypothetical protein
LOC_Os02g21620OsAffx.22467.1.S1_x_at4/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.30891.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.22467.1.S1_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.5.S1_x_at2/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.535.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.1.S1_x_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.7216.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.2.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21630Os.52016.1.A1_at11/112+12846467..12851439SEC14 cytosolic factor, putative, expressed
LOC_Os02g21640Os.18455.1.S1_at11/112+12852007..12852957expressed protein
LOC_Os02g21650Os.52450.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21650Os.53107.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21660Os.8864.1.S1_at11/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21660Os.11487.1.S1_s_at1/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52016.1.A1_at--306--6271Chr02:12850588..12850612 (25 bp)
GATGTGTTCTACTATTACTACCCAA
LOC_Os02g21630
Os.52016.1.A1_at--386--2831Chr02:12850625..12850649 (25 bp)
AAGTTCTTTTTGTTGATGCACCGTT
LOC_Os02g21630
Os.52016.1.A1_at--707--611Chr02:12850640..12850664 (25 bp)
ATGCACCGTTTGTGTTTCAGCCGAT
LOC_Os02g21630
Os.52016.1.A1_at--1037--6251Chr02:12850662..12850686 (25 bp)
GATGTGGCAGCTTGTTAAACCTTTG
LOC_Os02g21630
Os.52016.1.A1_at--960--8751Chr02:12850852..12850876 (25 bp)
TGTACCTCCTGATTTCCGCAATTAG
LOC_Os02g21630
Os.52016.1.A1_at--71--8991Chr02:12850883..12850907 (25 bp)
TGAACTGTTTATCATCTCTGTCACC
LOC_Os02g21630
Os.52016.1.A1_at--1094--3331Chr02:12850907..12850931 (25 bp)
CACTGGGTTGTTGCTCCGAAGAGAC
LOC_Os02g21630
Os.52016.1.A1_at--854--5991Chr02:12850927..12850951 (25 bp)
GAGACCGTTGAAGTACCTAGTGACA
LOC_Os02g21630
Os.52016.1.A1_at--859--8051Chr02:12851125..12851149 (25 bp)
GGAGAGCTCCAAACCATCGAGACTG
LOC_Os02g21630
Os.52016.1.A1_at--911--7111Chr02:12851193..12851217 (25 bp)
GTCAGGACCATCTCGAAATCATTAG
LOC_Os02g21630
Os.52016.1.A1_at--290--1471Chr02:12851229..12851253 (25 bp)
AGAATGTCTTGGGTGCTGTCGTTCC
LOC_Os02g21630
Target Sequence 
GATGTGTTCTACTATTACTACCCAAAGCGGCTCGGGCAAGTTCTTTTTGTTGATGCACCGTTTGTGTTTCAGCCGATGTG
GCAGCTTGTTAAACCTTTGTTGAAACAATATGCATCACTGGTGAGATTTTGTGATGTCGAGACAGTGAGAAAAGAATACT
TCACAAAAGAGACTGTACCTCCTGATTTCCGCAATTAGGTGCCATGAACTGTTTATCATCTCTGTCACCACTGGGTTGTT
GCTCCGAAGAGACCGTTGAAGTACCTAGTGACAGGAGAGCTCCAAACCATCGAGACTGAGCTAAATTGTATTGACATGAT
TTTTGGACTTCAATCTTGACAGTCAGGACCATCTCGAAATCATTAGCTAGTTGCTCAAGAATGTCTTGGGTGCTGTCGTT
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52016.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis