Browse Element(s) Details


OsAffx.12169.1.S1_x_at

Description tigr:9630.m02271
TID=OsAffx.12169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2437010/11hypothetical protein
LOC_Os01g292901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24330Os.15301.1.S1_at11/112+14109885..14113511Plant specific eukaryotic initiation factor 4B family protein, expressed
LOC_Os02g24340OsAffx.12168.1.S1_at10/112+14115233..141180401-acyl-sn-glycerol-3-phosphate acyltransferase zeta precursor, putative
LOC_Os02g24354Os.12054.1.S1_at11/112+14118570..14126214diaminopimelate decarboxylase family protein, expressed
LOC_Os02g24370OsAffx.12169.1.S1_at11/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.12169.1.S1_x_at10/112+14132525..14134066hypothetical protein
LOC_Os02g24370Os.27455.1.S1_x_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.11259.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.19363.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370Os.27455.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24380OsAffx.2727.1.S1_at8/112+14138340..14139351hypothetical protein
LOC_Os02g24390OsAffx.2728.1.S1_at11/112+14140046..14140988hypothetical protein
LOC_Os02g24390OsAffx.31091.1.S1_x_at1/112+14140046..14140988hypothetical protein
LOC_Os02g24400OsAffx.12170.1.S1_at11/112+14143743..14145052hypothetical protein
LOC_Os02g24400OsAffx.22442.1.S1_x_at1/112+14143743..14145052hypothetical protein
LOC_Os02g24410OsAffx.31083.3.S1_s_at11/112+14146692..14147775hypothetical protein
LOC_Os02g24420OsAffx.19776.1.S1_at1/112+14149302..14151875retrotransposon protein, putative, unclassified
LOC_Os02g24430OsAffx.12171.2.S1_at10/112+14156485..14160434SEC14 cytosolic factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12169.1.S1_x_at--707--271Chr02:14132604..14132628 (25 bp)
ATAGGAGCGGAGTAGGATGCAAGAT
LOC_Os02g24370
OsAffx.12169.1.S1_x_at--696--6314Chr04:12291473..12291493 (21 bp)
GATGCAAGATGGAAATCGTTCCGGA
NONE
OsAffx.12169.1.S1_x_at--523--9831Chr02:14132662..14132686 (25 bp)
TAAAGTACGAATCGGCTACGACCAG
LOC_Os02g24370
OsAffx.12169.1.S1_x_at--194--1171Chr02:14132665..14132689 (25 bp)
AGTACGAATCGGCTACGACCAGGAT
LOC_Os02g24370
OsAffx.12169.1.S1_x_at--1157--6971Chr02:14132666..14132690 (25 bp)
GTACGAATCGGCTACGACCAGGATT
LOC_Os02g24370
OsAffx.12169.1.S1_x_at--228--9951Chr02:14132667..14132691 (25 bp)
TACGAATCGGCTACGACCAGGATTG
LOC_Os02g24370
OsAffx.12169.1.S1_x_at--817--1831Chr02:14132668..14132692 (25 bp)
ACGAATCGGCTACGACCAGGATTGG
LOC_Os02g24370
OsAffx.12169.1.S1_x_at--19--4112Chr08:800288..800327 (24 bp)
CGAATCGGCTACGACCAGGATTGGC
NONE
OsAffx.12169.1.S1_x_at--323--8311Chr02:14132675..14132699 (25 bp)
GGCTACGACCAGGATTGGCAGAGTC
LOC_Os02g24370
OsAffx.12169.1.S1_x_at--548--3711Chr02:14132677..14132701 (25 bp)
CTACGACCAGGATTGGCAGAGTCCG
LOC_Os02g24370
OsAffx.12169.1.S1_x_at--381--4231NONE
CCGAGTTGGACAAGGATCAAATCAA
NONE
Target Sequence 
ATAGGAGCGGAGTAGGATGCAAGATGGAAATCGTTCCGGAAACAGAGCAAGGATCGGCTAAAGTACGAATCGGCTACGAC
CAGGATTGGCAGAGTCCGAGTTGGACAAGGATCAAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12169.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis