Browse Element(s) Details


OsAffx.12233.1.S1_at

Description tigr:9630.m02634
TID=OsAffx.12233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=resistance protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2771011/11resistance protein T10rga2-1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27660OsAffx.12229.2.S1_x_at10/112+16384482..16385174hypothetical protein
LOC_Os02g27660OsAffx.12229.2.S1_at10/112+16384482..16385174hypothetical protein
LOC_Os02g27670OsAffx.24457.1.S1_at11/112+16389892..16391316hypothetical protein
LOC_Os02g27670OsAffx.26697.1.S1_at1/112+16389892..16391316hypothetical protein
LOC_Os02g27680OsAffx.24458.4.S1_at11/112+16398585..16399403NB-ARC domain containing protein
LOC_Os02g27690OsAffx.24458.3.S1_at11/112+16400342..16402242Leucine Rich Repeat family protein
LOC_Os02g27700NANA2+16403468..16403885hypothetical protein
LOC_Os02g27710OsAffx.12233.1.S1_at11/112+16407037..16409792resistance protein T10rga2-1A, putative
LOC_Os02g27720NANA2+16413322..16417992retrotransposon protein, putative, unclassified
LOC_Os02g27730NANA2+16418891..16419697expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_s_at11/112+16420430..16425090expressed protein
LOC_Os02g27740OsAffx.24464.1.S1_at10/112+16420430..16425090expressed protein
LOC_Os02g27750Os.14919.1.S1_at7/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.56216.1.S1_at2/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750Os.46810.2.S1_x_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27750OsAffx.29313.1.S1_at1/112+16426370..16432210transposon protein, putative, Mutator sub-class
LOC_Os02g27760OsAffx.2770.1.S1_s_at10/112+16434397..1643660040S ribosomal protein S15a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12233.1.S1_at--1005--2671Chr02:16409203..16409227 (25 bp)
AAGCTGTCATGTCTGTCATTGCCAA
LOC_Os02g27710
OsAffx.12233.1.S1_at--65--10311Chr02:16409230..16409254 (25 bp)
TTTCCCTTCTTCACTCATTATCATT
LOC_Os02g27710
OsAffx.12233.1.S1_at--632--7871Chr02:16409274..16409298 (25 bp)
GGTTTACAAGGCTGTCTAGATCACA
LOC_Os02g27710
OsAffx.12233.1.S1_at--170--10051Chr02:16409290..16409314 (25 bp)
TAGATCACAAGTTCTCACCTCCAAG
LOC_Os02g27710
OsAffx.12233.1.S1_at--230--2491Chr02:16409360..16409384 (25 bp)
AACATGGATCACTCAGCTCCAGAAT
LOC_Os02g27710
OsAffx.12233.1.S1_at--124--1511Chr02:16409406..16409430 (25 bp)
AGCACCCAATTGAAGCTAGCTCTTT
LOC_Os02g27710
OsAffx.12233.1.S1_at--709--9972Chr02:16409422..16409446 (25 bp)
TAGCTCTTTCCTTGGAAGTCCTTGG
LOC_Os02g27710
OsAffx.12233.1.S1_at--898--211Chr02:16409458..16409482 (25 bp)
ATTTGGCCATTCTGCGGCTATGGAA
LOC_Os02g27710
OsAffx.12233.1.S1_at--1125--10651Chr02:16409532..16409556 (25 bp)
TTCCCCAGTCTTCTATTGCTGGAGA
LOC_Os02g27710
OsAffx.12233.1.S1_at--386--2711Chr02:16409585..16409609 (25 bp)
AAGCTTCACACAAGGAGCGATGCCA
LOC_Os02g27710
OsAffx.12233.1.S1_at--892--5431Chr02:16409735..16409759 (25 bp)
GAACCTACGTAATCAGCTTGCTCTA
LOC_Os02g27710
Target Sequence 
AAGCTGTCATGTCTGTCATTGCCAACCTTTCCCTTCTTCACTCATTATCATTGCGAGCGGAGGGGGATCAAGGTTTACAA
GGCTGTCTAGATCACAAGTTCTCACCTCCAAGTAAGCTTCAAAGCCTCAAGATTTATGGAAATCTAGTTACACTGCCAAC
ATGGATCACTCAGCTCCAGAATTTGGCTAAGCTGAAGCTACGGAGCACCCAATTGAAGCTAGCTCTTTCCTTGGAAGTCC
TTGGGAAGCTACCACATTTGGCCATTCTGCGGCTATGGAAGAATTCTTTTAAGAGCAAAGAACTCATTTTCCTTTTTCAG
CAGGGGACTTTCCCCAGTCTTCTATTGCTGGAGATTAAAGATATAGATGGCCTCAAATCATTAAGCTTCACACAAGGAGC
GATGCCAAGGCTTGAGTTGTTGCATACTGATAATTGTATACACATCGACAACAATGGGTTTTCTGGTGTGTCATCTCTCC
CAAGCCTAAAAGAAGTTATGCTCAAGGGTGACTACAACGACAAATTATTGAAGAACCTACGTAATCAGCTTGCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis