Browse Element(s) Details


OsAffx.12437.1.S1_at

Description tigr:9630.m03955
TID=OsAffx.12437.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4091011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40850Os.40855.5.S1_x_at11/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_at9/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_x_at6/112+24756878..24759423hypothetical protein
LOC_Os02g40860Os.27664.1.S1_at11/112+24760940..24766881Casein kinase I, epsilon isoform, putative, expressed
LOC_Os02g40870Os.16625.1.S1_at11/112+24767680..24769171Phosphatidylinositol N-acetylglucosaminyltransferase family protein, expressed
LOC_Os02g40880OsAffx.2932.1.S1_s_at11/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40880Os.7150.1.S1_at1/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40890Os.7522.1.S1_at10/112+24774059..24776899expressed protein
LOC_Os02g40900Os.24611.1.S1_at11/112+24777346..24780675expressed protein
LOC_Os02g40910OsAffx.12437.1.S1_at11/112+24783662..24784196hypothetical protein
LOC_Os02g40920Os.26886.1.S1_x_at7/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920Os.26886.3.S1_x_at4/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920OsAffx.16244.1.S1_x_at1/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.2.S1_s_at8/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.6.S1_s_at5/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930OsAffx.3425.1.S1_at1/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40940OsAffx.31018.3.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940OsAffx.31018.2.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940Os.50578.1.S1_x_at7/112+24801452..24805997hypothetical protein
LOC_Os02g40950Os.45774.1.S1_at11/112+24806724..24809466transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12437.1.S1_at--1051--7571Chr02:24784123..24784146 (24 bp)
GGGCTATGGCGAAATCGCCGAAATA
LOC_Os02g40910
OsAffx.12437.1.S1_at--358--9991Chr02:24783819..24783843 (25 bp)
TACCAAATGTACTTGTGATCCACCA
LOC_Os02g40910
OsAffx.12437.1.S1_at--9--10811Chr02:24783807..24783831 (25 bp)
TTGTGATCCACCAAGTTGGGCGATC
LOC_Os02g40910
OsAffx.12437.1.S1_at--22--3231Chr02:24783796..24783820 (25 bp)
CAAGTTGGGCGATCATGGGACACCA
LOC_Os02g40910
OsAffx.12437.1.S1_at--1054--8611Chr02:24783781..24783805 (25 bp)
TGGGACACCAAGGAGGCAATTGTAT
LOC_Os02g40910
OsAffx.12437.1.S1_at--327--2911Chr02:24783772..24783796 (25 bp)
AAGGAGGCAATTGTATTCACGGGAA
LOC_Os02g40910
OsAffx.12437.1.S1_at--316--9691Chr02:24783756..24783780 (25 bp)
TCACGGGAAGGGATCTGCCTGGCTA
LOC_Os02g40910
OsAffx.12437.1.S1_at--283--6411Chr02:24783745..24783769 (25 bp)
GATCTGCCTGGCTATAAAAACTGGA
LOC_Os02g40910
OsAffx.12437.1.S1_at--509--8291Chr02:24783736..24783760 (25 bp)
GGCTATAAAAACTGGACACCTTCCG
LOC_Os02g40910
OsAffx.12437.1.S1_at--609--10631Chr02:24783716..24783740 (25 bp)
TTCCGCCCCACTTGATCAAGGAAAT
LOC_Os02g40910
OsAffx.12437.1.S1_at--469--10691Chr02:24783692..24783716 (25 bp)
TTGGCCGGATGCAAAAGTAGCTATC
LOC_Os02g40910
Target Sequence 
GGGCTATGGCGAAATCGCCGAAATATATATACCAAATGTACTTGTGATCCACCAAGTTGGGCGATCATGGGACACCAAGG
AGGCAATTGTATTCACGGGAAGGGATCTGCCTGGCTATAAAAACTGGACACCTTCCGCCCCACTTGATCAAGGAAATTGG
CCGGATGCAAAAGTAGCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis