Browse Element(s) Details


OsAffx.12496.1.S1_at

Description tigr:9630.m04332
TID=OsAffx.12496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4475011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44710OsAffx.24726.1.S1_s_at11/112+27085984..27086938expressed protein
LOC_Os02g44710Os.14092.1.S1_at10/112+27085984..27086938expressed protein
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein
LOC_Os02g44730Os.50950.1.S1_x_at11/112+27097597..27100028tetracycline transporter protein, putative, expressed
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein
LOC_Os02g44770Os.49105.1.S1_at11/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44770Os.49105.2.S1_at10/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44780Os.18321.1.S1_at11/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.2.S1_at10/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.3.S1_at9/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44790NANA2+27121097..27124453transposon protein, putative, unclassified
LOC_Os02g44800OsAffx.24727.1.S1_at11/112+27126566..27126784hypothetical protein
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44820Os.51119.1.S1_at11/112+27131359..27132416expressed protein
LOC_Os02g44820Os.14076.1.S1_s_at11/112+27131359..27132416expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12496.1.S1_at--552--9171Chr02:27107868..27107892 (25 bp)
TGCCAGGATGTCACCACCCGTACGG
LOC_Os02g44750
OsAffx.12496.1.S1_at--233--1951Chr02:27107847..27107871 (25 bp)
ACGGCGACGGTTACAGAAGCGCTCG
LOC_Os02g44750
OsAffx.12496.1.S1_at--219--6311Chr02:27107810..27107834 (25 bp)
GATGAACACCCGTGCGGCGGCGCTA
LOC_Os02g44750
OsAffx.12496.1.S1_at--1075--7211Chr02:27106607..27106631 (25 bp)
GTCGACCTCCATGGATTGCAGGCTT
LOC_Os02g44750
OsAffx.12496.1.S1_at--1105--4331Chr02:27106599..27106623 (25 bp)
CCATGGATTGCAGGCTTCGTGGTGA
LOC_Os02g44750
OsAffx.12496.1.S1_at--179--8631Chr02:27106411..27106435 (25 bp)
TGGGTGCGCTCCACGTCGAAGTCCT
LOC_Os02g44750
OsAffx.12496.1.S1_at--554--491Chr02:27106376..27106400 (25 bp)
ATCGACCGCCTTCACATCTACGAGG
LOC_Os02g44750
OsAffx.12496.1.S1_at--822--6131Chr02:27106355..27106379 (25 bp)
GAGGTGGTTCGCACCTCGGTGCTCT
LOC_Os02g44750
OsAffx.12496.1.S1_at--702--8911Chr02:27106300..27106324 (25 bp)
TGCCCTTCGTCGACCTAACCTGGAG
LOC_Os02g44750
OsAffx.12496.1.S1_at--931--9331Chr02:27106267..27106291 (25 bp)
TCGCGGCATCCGACGTCGACGTGAT
LOC_Os02g44750
OsAffx.12496.1.S1_at--499--4051Chr02:27106221..27106245 (25 bp)
CGATGGCCGTTACGCGCCATTCCTT
LOC_Os02g44750
Target Sequence 
TGCCAGGATGTCACCACCCGTACGGCGACGGTTACAGAAGCGCTCGCCCTCCTCCTCAGATGAACACCCGTGCGGCGGCG
CTAGCAAGAGGAGGAAGGGGCGGGCTACGCCGTCGACCTCCATGGATTGCAGGCTTCGTGGTGATGGAGGCGGAAGAGGG
TTTCTGGAAGGGAGGAAGCAAAGCACGCAGGAAGAGGCAGCTAGCGGCGGTGAAGGCGGAGTTGCCGCCGGATGCGCTGG
GTGCGCTCCACGTCGAAGTCCTCGACAACATCATCGACCGCCTTCACATCTACGAGGTGGTTCGCACCTCGGTGCTCTCA
TGTGCATGGTGGGGCTGCTGGGAGTCGCTGCCCTTCGTCGACCTAACCTGGAGCCCCGACGTCGCGGCATCCGACGTCGA
CGTGATCCTCCTCCGACGCTCTGCCACCGATGGCCGTTACGCGCCATTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis