Browse Element(s) Details


OsAffx.12639.1.S1_at

Description tigr:9630.m05405
TID=OsAffx.12639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to contains similarity to Drosophila melanogaster BcDNA.GH03694
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5450011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12639.1.S1_at--458--3811Chr02:33372478..33372502 (25 bp)
CTCCGTTTGCTACAAGTGATTCTCT
LOC_Os02g54500
OsAffx.12639.1.S1_at--343--2871Chr02:33372491..33372515 (25 bp)
AAGTGATTCTCTTACCTTCTCACTG
LOC_Os02g54500
OsAffx.12639.1.S1_at--152--3651Chr02:33372506..33372530 (25 bp)
CTTCTCACTGTCAGCTGGTTTTGAT
LOC_Os02g54500
OsAffx.12639.1.S1_at--870--4711Chr02:33372519..33372570 (25 bp)
GCTGGTTTTGATCTTTCTCACTTTT
LOC_Os02g54500
OsAffx.12639.1.S1_at--329--9011Chr02:33372602..33372626 (25 bp)
TGAATCTCTCTATGAGCTTGCTGGG
LOC_Os02g54500
OsAffx.12639.1.S1_at--257--8091Chr02:33372626..33372731 (25 bp)
GGAGCTGGTTCGCTTCTTGCTAAGA
LOC_Os02g54500
OsAffx.12639.1.S1_at--574--9351Chr02:33372716..33372740 (25 bp)
TCGCTTCTTGCTAAGATCTGGCAGA
LOC_Os02g54500
OsAffx.12639.1.S1_at--138--3671Chr02:33372743..33372767 (25 bp)
CTTTGAAAATGCCAGTACAGACTCT
LOC_Os02g54500
OsAffx.12639.1.S1_at--1138--3851Chr02:33373205..33373229 (25 bp)
CTGATTGGACAAAAGGTCTCGTTAA
LOC_Os02g54500
OsAffx.12639.1.S1_at--329--7171Chr02:33373220..33373244 (25 bp)
GTCTCGTTAACAAACCATGAAGCAT
LOC_Os02g54500
OsAffx.12639.1.S1_at--322--10351Chr02:33373247..33373271 (25 bp)
TTTAGTGTGTTCCATTTAGTAGCAA
LOC_Os02g54500
Target Sequence 
CTCCGTTTGCTACAAGTGATTCTCTTACCTTCTCACTGTCAGCTGGTTTTGATCTTTCTCACTTTTTAGTGCTTGTTACT
ATCCAGGCTACACTTGATGAATCTCTCTATGAGCTTGCTGGGGAGCTGGTTCGCTTCTTGCTAAGATCTGGCAGAGACTT
TGAAAATGCCAGTACAGACTCTGAAAAGCTTTCTCCAAGGTTTCTGAGCTACTTTCAATTACGTTCACCATTCAAGAGAC
AATCTTCTGATTTGAGAAGTAACTCAATGAAAGAGCTCAGCCCACATATTGCCTCTGTCATGAATATTCTGGAGAACCAT
GCTAGCTATTTGATGTCTGGCAAGGAGCTTTCTAAGCTGGTTGCTTTTGTGAAAGGAACTCAGTTTGATCTTGTGGAATA
TCTTCAGCGAGAAAGGCTAGGGTCTGCTCGACTAGAGAATTTTGCATCTGCACTTGAACTGATTGGACAAAAGGTCTCGT
TAACAAACCATGAAGCATTATTTAGTGTGTTCCATTTAGTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis