Browse Element(s) Details


OsAffx.12674.1.S1_at

Description tigr:9630.m05643
TID=OsAffx.12674.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable phloem-specific lectin (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5682011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56750Os.54857.1.S1_at11/112+34788376..34790766F-box domain containing protein, expressed
LOC_Os02g56760OsAffx.24899.1.S1_at10/112+34792412..34795604F-box domain containing protein
LOC_Os02g56770OsAffx.12673.1.S1_x_at11/112+34796215..34796659F-box domain containing protein, expressed
LOC_Os02g56780Os.47463.1.S1_x_at5/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56780Os.14491.2.S1_x_at4/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56790NANA2+34803569..34806873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56830Os.56073.1.S1_at10/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.2.S1_x_at8/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_x_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56840Os.11505.1.S1_at11/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56840Os.56351.1.S1_at1/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56850Os.52324.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56850Os.4154.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12674.1.S1_at--226--1131Chr02:34819309..34819333 (25 bp)
AGTGCTATGTACTCTCGGCCAGAAC
LOC_Os02g56820
OsAffx.12674.1.S1_at--47--7011Chr02:34819317..34819341 (25 bp)
GTACTCTCGGCCAGAACGTTGGTAA
LOC_Os02g56820
OsAffx.12674.1.S1_at--1064--1391Chr02:34819354..34819378 (25 bp)
AGACGTCGGATTACCGGCGCTGGAT
LOC_Os02g56820
OsAffx.12674.1.S1_at--738--991Chr02:34819565..34819589 (25 bp)
AGGTTCGCAGAAGCCGTTGAATTCA
LOC_Os02g56820
OsAffx.12674.1.S1_at--871--6651Chr02:34819580..34819604 (25 bp)
GTTGAATTCATGGATGCTCCTCCCC
LOC_Os02g56820
OsAffx.12674.1.S1_at--495--10033Chr02:34819626..34819650 (25 bp)
TAGACAGCATGGTGCTGACCCCAAA
LOC_Os02g56820
OsAffx.12674.1.S1_at--143--2811Chr02:34819679..34819703 (25 bp)
AAGATAGCCGATGGGTTGTACGAGC
LOC_Os02g56820
OsAffx.12674.1.S1_at--782--5891Chr02:34819700..34819724 (25 bp)
GAGCTGGACACTTCACCACACGATG
LOC_Os02g56820
OsAffx.12674.1.S1_at--435--611Chr02:34819722..34819746 (25 bp)
ATGCGACGGTCAGCATCGGAGAGAA
LOC_Os02g56820
OsAffx.12674.1.S1_at--953--7871Chr02:34819762..34819786 (25 bp)
GGTTGCCTTCACAGGAAGGTACCCT
LOC_Os02g56820
OsAffx.12674.1.S1_at--1131--9951Chr02:34819781..34819805 (25 bp)
TACCCTGAGAGAAGAGCTGACGGCT
LOC_Os02g56820
Target Sequence 
AGTGCTATGTACTCTCGGCCAGAACGTTGGTAATTAAGTGCAGCGAGACGTCGGATTACCGGCGCTGGATCCCCCTCGCC
GACTCGAGGTTCGCAGAAGCCGTTGAATTCATGGATGCTCCTCCCCGGATGGAAATCCGTAGCAAGATAGACAGCATGGT
GCTGACCCCAAACTCGACTTACGCTGCGTTCATGGTGTTCAAGATAGCCGATGGGTTGTACGAGCTGGACACTTCACCAC
ACGATGCGACGGTCAGCATCGGAGAGAATGAATCGAGACGCGAGGTTGCCTTCACAGGAAGGTACCCTGAGAGAAGAGCT
GACGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis