Browse Element(s) Details


OsAffx.12680.1.S1_at

Description tigr:9630.m05733
TID=OsAffx.12680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5755011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0016481biological_processnegative regulation of transcription
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12680.1.S1_at--751--8251Chr02:35255822..35255846 (25 bp)
GGCAGCCGTACAACTGCACCTTCTG
LOC_Os02g57550
OsAffx.12680.1.S1_at--737--9851Chr02:35255814..35255838 (25 bp)
TACAACTGCACCTTCTGCAGGAGGG
LOC_Os02g57550
OsAffx.12680.1.S1_at--343--7911Chr02:35255734..35255758 (25 bp)
GGTTGGAAGAGCGACGCCGTCCTCC
LOC_Os02g57550
OsAffx.12680.1.S1_at--325--5191Chr02:35255685..35255709 (25 bp)
GCAAGGCGAAGCGTCAGCTACGATA
LOC_Os02g57550
OsAffx.12680.1.S1_at--285--7111Chr02:35255673..35255697 (25 bp)
GTCAGCTACGATACGCTCGTGAGGT
LOC_Os02g57550
OsAffx.12680.1.S1_at--97--311Chr02:35255663..35255687 (25 bp)
ATACGCTCGTGAGGTTGTTTCGTCC
LOC_Os02g57550
OsAffx.12680.1.S1_at--944--9411Chr02:35255657..35255681 (25 bp)
TCGTGAGGTTGTTTCGTCCGCCGGC
LOC_Os02g57550
OsAffx.12680.1.S1_at--1138--8391Chr02:35255554..35255578 (25 bp)
GGCGCCGCAAGAGCTAAGGCTGTTT
LOC_Os02g57550
OsAffx.12680.1.S1_at--442--1571Chr02:35255543..35255567 (25 bp)
AGCTAAGGCTGTTTGGGCGCGGCGC
LOC_Os02g57550
OsAffx.12680.1.S1_at--690--1351Chr02:35255493..35255517 (25 bp)
AGAGATCGACGAGATCGCTACGGCT
LOC_Os02g57550
OsAffx.12680.1.S1_at--741--4091Chr02:35255487..35255511 (25 bp)
CGACGAGATCGCTACGGCTGCTGCT
LOC_Os02g57550
Target Sequence 
GGCAGCCGTACAACTGCACCTTCTGCAGGAGGGGCTTCCCGACGGCGCAGGCGCTCGGCGGGCACATGAACGTCCACCGG
AAGGACAGGGTTGGAAGAGCGACGCCGTCCTCCTCGTCGTCGACGACGGCGGCGGCGGCAAGGCGAAGCGTCAGCTACGA
TACGCTCGTGAGGTTGTTTCGTCCGCCGGCGAGCGGAGGAAGCGAGGATGCGGCGGCGTCCACGGCGGCCGGCGGCGGCG
CGAGCCTGAGGTCCCGTACCGCCGAGCCGGCGCCGCAAGAGCTAAGGCTGTTTGGGCGCGGCGCCGGCCGTCGGGAAGAA
GGTGGTGGTAGAGATCGACGAGATCGCTACGGCTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis