Browse Element(s) Details


OsAffx.12711.1.S1_x_at

Description tigr:9631.m00137
TID=OsAffx.12711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kinesin motor domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0229011/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein
LOC_Os03g02280Os.50021.1.S1_at10/113+759421..760197expressed protein
LOC_Os03g02290OsAffx.12711.1.S1_x_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02290Os.51682.1.S1_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02300Os.55532.1.S1_at1/113+771994..772674expressed protein
LOC_Os03g02310Os.5131.1.S1_at11/113+773712..776444LOC496359 protein, putative, expressed
LOC_Os03g02320Os.17312.2.S1_x_at11/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02320Os.46609.1.S1_x_at10/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02330Os.30518.1.S1_at11/113+791171..793070ATPase, AAA family protein, expressed
LOC_Os03g02330Os.2528.1.S1_x_at1/113+791171..793070ATPase, AAA family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12711.1.S1_x_at--397--5491Chr03:768822..768846 (25 bp)
GAACACCATCGATCAGTTGCAGAAT
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--857--5491Chr03:769116..769140 (25 bp)
GAACAGAGGCTATGCTTCAGATCAA
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--423--8152Chr03:769263..769287 (25 bp)
GGACAACACTTCAGGACACAAACAT
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--51--731Chr03:769286..769310 (25 bp)
ATGATACTTGACTCGACCAACTGTA
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--1055--6011Chr03:769312..769336 (25 bp)
GAGAGTTGCTAGTACTCCTGGAGAG
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--479--5131Chr03:769337..769361 (25 bp)
GCAAAGGCGCACCTCTTGACAAGAG
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--121--5572Chr03:769420..769444 (25 bp)
GAAAGTCACCAACAATTCTTCCATT
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--301--5431Chr03:769522..769546 (25 bp)
GAACCAGCCTGTTGGAAGCCAGAAT
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--881--5511Chr03:769590..769614 (25 bp)
GAAAATCGACCGAGCCGCTGAAGAA
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--993--4311Chr03:769616..769640 (25 bp)
CCAGGACGGGTGACGGCAACTTCAA
LOC_Os03g02290
OsAffx.12711.1.S1_x_at--979--2751Chr03:769661..769685 (25 bp)
AAGACGGGTCCTGTTACCAGAGCCA
LOC_Os03g02290
Target Sequence 
GAACACCATCGATCAGTTGCAGAATCTAAGGCAATGGAAATAGGACAGGAGCTCCTGGAAACACAGAGAACAGAGGCTAT
GCTTCAGATCAAGCCAAGAGATCTTGAGAATAACTTGCAAGAAAGGACAACACTTCAGGACACAAACATGATACTTGACT
CGACCAACTGTATGAGAGTTGCTAGTACTCCTGGAGAGGCAAAGGCGCACCTCTTGACAAGAGAGGAAGCAATGAGCGAG
AAGGAGCAGCACATTCTGAGAAGCTCAGATTCTATGAACAAGAAAGTCACCAACAATTCTTCCATTGTTGGGGCTCCAGA
AGTTGTCAATGAGAAGAAGAGGAAAGGAGATGCAAGGAATTCATCGATTGGTGGGGAATTGGAGAACCAGCCTGTTGGAA
GCCAGAATGCTTCAAGGAAGAGGAGCCTGCAAGGTGAGCCAAGGCTGAAGAGAAAATCGACCGAGCCGCTGAAGAACCCA
GGACGGGTGACGGCAACTTCAAAGACGGCCGCTGCCACACACAAGACGGGTCCTGTTACCAGAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12711.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis