Browse Element(s) Details


OsAffx.12724.1.S1_at

Description tigr:9631.m00280
TID=OsAffx.12724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0369010/11Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os10g127607/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12724.1.S1_at--1055--6211NONE
GAGGCCACGCAGGATAATTGGGTTC
NONE
OsAffx.12724.1.S1_at--1072--3291Chr03:1620864..1621248 (25 bp)
CACGCAGGATAATTGGGTTCTATAA
LOC_Os03g03690
OsAffx.12724.1.S1_at--1029--10111Chr03:1621481..1621505 (25 bp)
TTTTTTTCCCTTATTGTACACAATG
LOC_Os03g03690
OsAffx.12724.1.S1_at--97--2992Chr03:1621502..1621526 (25 bp)
AATGTTTTCTGATAGGTGCGTTCCT
LOC_Os03g03690
OsAffx.12724.1.S1_at--349--9652Chr03:1621858..1621882 (25 bp)
TCAGTTAGATTTTCACCACTCCAAA
LOC_Os03g03690
OsAffx.12724.1.S1_at--533--1711Chr03:1621872..1621896 (25 bp)
ACCACTCCAAAAAGTAGCATTCCTG
LOC_Os03g03690
OsAffx.12724.1.S1_at--344--2292Chr03:1621898..1621922 (25 bp)
AAATGCTGTCACTGGCAGGTGGTAC
LOC_Os03g03690
OsAffx.12724.1.S1_at--858--4732Chr03:1621902..1621926 (25 bp)
GCTGTCACTGGCAGGTGGTACTAAA
LOC_Os03g03690
OsAffx.12724.1.S1_at--771--7732Chr03:1621915..1621939 (25 bp)
GGTGGTACTAAATGTGAGTGCCATT
LOC_Os03g03690
OsAffx.12724.1.S1_at--18--8072Chr03:1621943..1622299 (25 bp)
GGAGCAGCAATTATTGCGGATCAAC
LOC_Os03g03690
OsAffx.12724.1.S1_at--464--3772Chr03:1623015..1623039 (25 bp)
CTCTGTTACTTATGGCTCAGTCGCT
LOC_Os03g03690
Target Sequence 
GAGGCCACGCAGGATAATTGGGTTCTATAATTTCAGTTTCTTAAGGCAGCTGCGCGAGGATTGCTTGGCCTCCCCATTGG
ACCTACTTACCTTTTTTTTCCCTTATTGTACACAATGTTTTCTGATAGGTGCGTTCCTAAATGCATTTGGAGCAATTGTT
CTTGGTGCACCCATTGGAATCAAGTACTGGGCAGCAACAACTTATTGGTCACTTCTCATGTCCTTGTTCACATTAGATTC
AGTTAGATTTTCACCACTCCAAAAAGTAGCATTCCTGGAAATGCTGTCACTGGCAGGTGGTACTAAATGTGAGTGCCATT
TTTGGAGCAGCAATTATTGCGGATCAACTGATTCAGTGGACTACATGATATCTGCACCTGCTCATGGAGCTGTAATAGGA
GCATGGCTTGGTGCTTGGCCTATGCCTCTCGACTGGGAAAGACCTTGGCAGGAATGGCCAATCTCTGTTACTTATGGCTC
AGTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis