Browse Element(s) Details


OsAffx.12764.2.S1_at

Description tigr:9631.m00665
TID=OsAffx.12764.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0735011/11glycosyl transferase family 2 protein, putative, expressed
LOC_Os09g267703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein
LOC_Os03g07290Os.14697.1.S1_at11/113+3690248..3692364ribosomal protein L32 containing protein, expressed
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12764.2.S1_at--827--6712Chr09:16264174..16264198 (25 bp)
GTTCTACCTCCTGGTATGCGCGTCT
LOC_Os09g26770
OsAffx.12764.2.S1_at--109--1751Chr03:3712465..3712489 (25 bp)
ACCTCCTGGTATGCGCGTCTTACGA
LOC_Os03g07350
OsAffx.12764.2.S1_at--89--3911Chr03:3712470..3712494 (25 bp)
CTGGTATGCGCGTCTTACGATTTGG
LOC_Os03g07350
OsAffx.12764.2.S1_at--557--6911Chr03:3712473..3712497 (25 bp)
GTATGCGCGTCTTACGATTTGGTGC
LOC_Os03g07350
OsAffx.12764.2.S1_at--405--611Chr03:3712475..3712499 (25 bp)
ATGCGCGTCTTACGATTTGGTGCTC
LOC_Os03g07350
OsAffx.12764.2.S1_at--918--4131Chr03:3712478..3712502 (25 bp)
CGCGTCTTACGATTTGGTGCTCGGG
LOC_Os03g07350
OsAffx.12764.2.S1_at--532--4392Chr09:16264217..16264241 (25 bp)
GCCAAGCACTACTACCTGTACATCT
LOC_Os09g26770
OsAffx.12764.2.S1_at--25--2732Chr09:16264220..16264244 (25 bp)
AAGCACTACTACCTGTACATCTACC
LOC_Os09g26770
OsAffx.12764.2.S1_at--534--9891Chr03:3712512..3712536 (25 bp)
TACTACCTGTACATCTACCTCCAGG
LOC_Os03g07350
OsAffx.12764.2.S1_at--309--8751Chr03:3712519..3712543 (25 bp)
TGTACATCTACCTCCAGGCATTTGC
LOC_Os03g07350
OsAffx.12764.2.S1_at--677--9871Chr03:3712521..3712545 (25 bp)
TACATCTACCTCCAGGCATTTGCTT
LOC_Os03g07350
Target Sequence 
GTTCTACCTCCTGGTATGCGCGTCTTACGATTTGGTGCTCGGGGCCAAGCACTACTACCTGTACATCTACCTCCAGGCAT
TTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12764.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis