Browse Element(s) Details


OsAffx.12776.1.S1_at

Description tigr:9631.m00752
TID=OsAffx.12776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cupin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0815011/11Cupin family protein, expressed
LOC_Os10g349101/11secretory protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08100Os.14134.1.S1_at10/113+4112575..4115607hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08110Os.48498.1.S1_at11/113+4116077..4121832hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08120OsAffx.15367.1.S1_at1/113+4124340..4127243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g08130OsAffx.25014.1.S1_at11/113+4127938..4129282hypothetical protein
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed
LOC_Os03g08150OsAffx.12776.1.S1_at11/113+4136722..4137464Cupin family protein, expressed
LOC_Os03g08160OsAffx.3171.1.S1_at11/113+4140669..4144127hypothetical protein
LOC_Os03g08160Os.7286.1.S1_at1/113+4140669..4144127hypothetical protein
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180OsAffx.12777.1.S1_at11/113+4158638..4159174hypothetical protein
LOC_Os03g08190OsAffx.25015.1.S1_at11/113+4159536..4159937hypothetical protein
LOC_Os03g08200OsAffx.12778.1.S1_at11/113+4160779..4161603expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042829biological_processdefense response to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12776.1.S1_at--126--9552Chr03:4136866..4136890 (25 bp)
TCTTCGACTACTGCGTCGCCGACAC
LOC_Os03g08150
OsAffx.12776.1.S1_at--428--3751Chr03:4137015..4137039 (25 bp)
CTCTACGGCTTCAACGCGACGCTGA
LOC_Os03g08150
OsAffx.12776.1.S1_at--163--1631Chr03:4137168..4137192 (25 bp)
AGCGGGAGCGTCCTGGTCGGGTTCG
LOC_Os03g08150
OsAffx.12776.1.S1_at--629--9431Chr03:4137184..4137208 (25 bp)
TCGGGTTCGCCGACACGTCGTACCG
LOC_Os03g08150
OsAffx.12776.1.S1_at--236--4511Chr03:4137192..4137216 (25 bp)
GCCGACACGTCGTACCGGCTGTACA
LOC_Os03g08150
OsAffx.12776.1.S1_at--934--6971Chr03:4137203..4137227 (25 bp)
GTACCGGCTGTACACCCAGCTGCTG
LOC_Os03g08150
OsAffx.12776.1.S1_at--274--9431Chr03:4137244..4137268 (25 bp)
TCGTGTTCCCGAGGGCCATGGTGCA
LOC_Os03g08150
OsAffx.12776.1.S1_at--713--5111Chr03:4137266..4137290 (25 bp)
GCACTTCCTGTACAACATGGACACG
LOC_Os03g08150
OsAffx.12776.1.S1_at--457--8751Chr03:4137274..4137298 (25 bp)
TGTACAACATGGACACGGCAGCGCC
LOC_Os03g08150
OsAffx.12776.1.S1_at--936--9851Chr03:4137276..4137300 (25 bp)
TACAACATGGACACGGCAGCGCCGG
LOC_Os03g08150
OsAffx.12776.1.S1_at--59--3231Chr03:4137410..4137434 (25 bp)
CAAGATCACCGGCCAGGACGTGCAG
LOC_Os03g08150
Target Sequence 
TCTTCGACTACTGCGTCGCCGACACGGCGGCGGCGACCGCGGCCGGGGCGTTCCACCTGAACGGCCTCGCCTGCATCGAC
CCGGCGCTGGCACGCGCCGACCACTTCGCCACGTCCGCGCTCTCCCGCGCCACCAACCCGGCCGCCACGCTCTACGGCTT
CAACGCGACGCTGACGAGCCCGGCCGCGTCGCTGCCCGGCGCCAACGCGCAGGGCCTCGCCATGGCGCGCATCGACCTCG
CGCCGGGCGGCATGGCGCCGCCGCACTCCCACCCGCGCGCGTCGGAGGCGGCGCTCGTCCTCAGCGGGAGCGTCCTGGTC
GGGTTCGCCGACACGTCGTACCGGCTGTACACCCAGCTGCTGCGCGCCGGCGAGGCGTTCGTGTTCCCGAGGGCCATGGT
GCACTTCCTGTACAACATGGACACGGCAGCGCCGGCCGTCGTGCTGTCCGGGCTCAACAGCCAGAGCCCCGGCGCGCAGC
TCGTGCCCTTCTCGGCGTTCCGGACGGAGCCGCGGCTGCCGGACGAGGTCCTCAAGAAGGCGTTCAAGATCACCGGCCAG
GACGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis