Browse Element(s) Details


OsAffx.12830.1.S1_at

Description tigr:9631.m01109
TID=OsAffx.12830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1189011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11840Os.50168.1.S1_at11/113+6182247..6183110expressed protein
LOC_Os03g11850NANA3+6186002..6190381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g11860NANA3+6191493..6195746hypothetical protein
LOC_Os03g11874OsAffx.12829.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53694.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.4.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.3.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.43567.1.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53217.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.22659.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11890OsAffx.12830.1.S1_at11/113+6207023..6211624expressed protein
LOC_Os03g11900Os.11851.1.S1_at10/113+6212597..6217412Sugar carrier protein C, putative, expressed
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed
LOC_Os03g11930OsAffx.25064.1.S1_at11/113+6229544..6230839hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12830.1.S1_at--560--411Chr03:6210761..6211064 (25 bp)
ATCATGGCGTTCTTTTCTGATGACA
LOC_Os03g11890
OsAffx.12830.1.S1_at--59--9651Chr03:6211088..6211112 (25 bp)
TCAGTACCACTGAAGGGCATTCCAT
LOC_Os03g11890
OsAffx.12830.1.S1_at--594--1311Chr03:6211132..6211156 (25 bp)
AGATGGGATTCCTAGTTCAAGTCGA
LOC_Os03g11890
OsAffx.12830.1.S1_at--843--2851Chr03:6211150..6211174 (25 bp)
AAGTCGAAAGGCACCATCATGGCTA
LOC_Os03g11890
OsAffx.12830.1.S1_at--670--4851Chr03:6211171..6211195 (25 bp)
GCTACCATCGGTGACCCTGGAGGGA
LOC_Os03g11890
OsAffx.12830.1.S1_at--241--11Chr03:6211220..6211244 (25 bp)
GTAATTTCAACCACCGGGAGCCCAT
LOC_Os03g11890
OsAffx.12830.1.S1_at--833--10791Chr03:6211260..6211284 (25 bp)
TTGGCGGAACTGACTTCCAGACAGT
LOC_Os03g11890
OsAffx.12830.1.S1_at--475--1971Chr03:6211298..6211322 (25 bp)
ACTGTTGATGAACTGGATGCCCTAA
LOC_Os03g11890
OsAffx.12830.1.S1_at--700--10111Chr03:6211348..6211372 (25 bp)
TATGTACCAGCAACGTGCCAATGAT
LOC_Os03g11890
OsAffx.12830.1.S1_at--721--5711Chr03:6211390..6211414 (25 bp)
GACTCTGAAACACGTCACCATGGTT
LOC_Os03g11890
OsAffx.12830.1.S1_at--672--2311Chr03:6211521..6211545 (25 bp)
AAAGGACACACCATCGATTTCTCAG
LOC_Os03g11890
Target Sequence 
ATCATGGCGTTCTTTTCTGATGACAATTCTAACGCTGGTAGTGGTACATCAGTACCACTGAAGGGCATTCCATGCAACAT
TGCTGAAAGAATAGATGGGATTCCTAGTTCAAGTCGAAAGGCACCATCATGGCTACCATCGGTGACCCTGGAGGGAGTTC
CATTTTTAGAAAAACAAGGAGTAATTTCAACCACCGGGAGCCCATTAACGCTTAGAAAATTTGGCGGAACTGACTTCCAG
ACAGTTGATAATAAGCCTACTGTTGATGAACTGGATGCCCTAATCAGGTTAAAGCAGGCTGAAGCAAATATGTACCAGCA
ACGTGCCAATGATGCACGCAAAGAAGCTGAGACTCTGAAACACGTCACCATGGTTAAACATGCACAAATAGAGGAACATT
ATGCTACTCAAATAGGTGAACTCCACATAAATGAGTTACAAGAGCAACGCAAAAGAAAGATTGAAGAACTGCAAGTCATT
GAAAGGACACACCATCGATTTCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis