Browse Element(s) Details


OsAffx.12858.1.S1_at

Description tigr:9631.m01380
TID=OsAffx.12858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1439011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14330NANA3+7780310..7783263expressed protein
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14370Os.27683.2.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14370OsAffx.3240.1.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14390OsAffx.12858.1.S1_at11/113+7807082..7808351hypothetical protein
LOC_Os03g14400Os.8110.1.S1_at10/113+7810937..7812796Cytochrome P450 family protein, expressed
LOC_Os03g14410Os.52789.1.S1_at1/113+7813588..7817890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14420Os.15637.1.S1_s_at11/113+7819865..7822224Cytochrome P450 family protein, expressed
LOC_Os03g14430OsAffx.12859.1.S1_at11/113+7822702..7823350hypothetical protein
LOC_Os03g14440OsAffx.3241.1.S1_at11/113+7823964..7824437hypothetical protein
LOC_Os03g14450Os.10756.1.S1_at11/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.57462.1.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.2232.3.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12858.1.S1_at--344--7892Chr12:14767187..14767207 (21 bp)
GGTTACAAGGTCATGTTGCCTCCTC
NONE
OsAffx.12858.1.S1_at--572--9712Chr02:15790670..15790689 (20 bp)
TCAAGCTTTTGAGGCATGGACACCC
NONE
OsAffx.12858.1.S1_at--1139--8251Chr03:7808203..7808227 (25 bp)
GGCATGGACACCCACTACATCTAGG
LOC_Os03g14390
OsAffx.12858.1.S1_at--128--9891Chr03:7808188..7808212 (25 bp)
TACATCTAGGCTCCCATGGCGGAAG
LOC_Os03g14390
OsAffx.12858.1.S1_at--398--8811Chr03:7808127..7808151 (25 bp)
TGTTGACCAACGTGGGCTTCTCGAA
LOC_Os03g14390
OsAffx.12858.1.S1_at--1022--9351Chr03:7808107..7808131 (25 bp)
TCGAACTCCTAGACGCGTTGCTGAT
LOC_Os03g14390
OsAffx.12858.1.S1_at--849--7591Chr03:7808072..7808096 (25 bp)
GGGCATGACCATGAAGCTTCTAGAT
LOC_Os03g14390
OsAffx.12858.1.S1_at--738--6951Chr03:7808047..7808071 (25 bp)
GTAGAGCTTTCATTGGCGGCGACGC
LOC_Os03g14390
OsAffx.12858.1.S1_at--265--8391Chr03:7807858..7808054 (25 bp)
GGCGACGCGATGGTATCAAACCTGA
LOC_Os03g14390
OsAffx.12858.1.S1_at--616--10171Chr03:7807808..7807832 (25 bp)
TATCATGGCTAGCTGCGAGGCATCA
LOC_Os03g14390
OsAffx.12858.1.S1_at--46--3573Chr03:22203760..22203779 (20 bp)
CATCAGGTATCATGGCTGGCTACGA
NONE
Target Sequence 
GGTTACAAGGTCATGTTGCCTCCTCCTCCGTCTCAAGCTTTTGAGGCATGGACACCCACTACATCTAGGCTCCCATGGCG
GAAGGGGGCAACCAGGAAGTAGGGAGGCTGTCGGGAAGGATGTTGACCAACGTGGGCTTCTCGAACTCCTAGACGCGTTG
CTGATGGTGATGGAGGGGCATGACCATGAAGCTTCTAGATGTAGAGCTTTCATTGGCGGCGACGCGATGGTATCAAACCT
GATACATGGTACCTGCGAGGTATCAAGTATCATGGCTAGCTGCGAGGCATCAGGTATCATGGCTGGCTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis