Browse Element(s) Details


OsAffx.12876.1.S1_at

Description tigr:9631.m01511
TID=OsAffx.12876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1564011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12876.1.S1_at--169--2951Chr03:8607223..8607247 (25 bp)
AAGGCTGCCGATCGCAAAGTGAGCT
LOC_Os03g15640
OsAffx.12876.1.S1_at--1091--4771Chr03:8607220..8607244 (25 bp)
GCTGCCGATCGCAAAGTGAGCTTGA
LOC_Os03g15640
OsAffx.12876.1.S1_at--504--5131Chr03:8607210..8607234 (25 bp)
GCAAAGTGAGCTTGAGCGCTCTTAA
LOC_Os03g15640
OsAffx.12876.1.S1_at--331--4931Chr03:8607201..8607225 (25 bp)
GCTTGAGCGCTCTTAAAAACACTAA
LOC_Os03g15640
OsAffx.12876.1.S1_at--391--5871Chr03:8607197..8607221 (25 bp)
GAGCGCTCTTAAAAACACTAACAGT
LOC_Os03g15640
OsAffx.12876.1.S1_at--90--2471Chr03:8607189..8607208 (20 bp)
AACACTAACAGTCAACACAGCCTCT
LOC_Os03g15640
OsAffx.12876.1.S1_at--1059--9811Chr03:8607051..8607203 (25 bp)
TAACAGTCAACACAGCCTCTCATGG
LOC_Os03g15640
OsAffx.12876.1.S1_at--515--7091Chr03:8607046..8607198 (25 bp)
GTCAACACAGCCTCTCATGGTCGCA
LOC_Os03g15640
OsAffx.12876.1.S1_at--615--791Chr03:8607030..8607054 (25 bp)
ATGGTCGCACCACAAGCTCCAAAAG
LOC_Os03g15640
OsAffx.12876.1.S1_at--961--2871Chr03:8607002..8607026 (25 bp)
AAGGGCCTCCAGGTCATGCAGATTA
LOC_Os03g15640
OsAffx.12876.1.S1_at--937--7551Chr03:8607000..8607024 (25 bp)
GGGCCTCCAGGTCATGCAGATTATT
LOC_Os03g15640
Target Sequence 
AAGGCTGCCGATCGCAAAGTGAGCTTGAGCGCTCTTAAAAACACTAACAGTCAACACAGCCTCTCATGGTCGCACCACAA
GCTCCAAAAGGCCAAGGGCCTCCAGGTCATGCAGATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis