Browse Element(s) Details


OsAffx.12877.1.S1_at

Description tigr:9631.m01514
TID=OsAffx.12877.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15710Os.33475.1.S1_at11/113+8643321..8645199Strictosidine synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12877.1.S1_at--339--1791Chr03:8620919..8620943 (25 bp)
ACCGACGACGTGGACACTAGCAGCA
LOC_Os03g15670
OsAffx.12877.1.S1_at--959--2171Chr03:8620932..8620956 (25 bp)
ACACTAGCAGCATGTCCGGGAGGGA
LOC_Os03g15670
OsAffx.12877.1.S1_at--55--4151Chr03:8620968..8620992 (25 bp)
CGCGGAGCGGTTGGCGAATGCTAAT
LOC_Os03g15670
OsAffx.12877.1.S1_at--212--4831Chr03:8620987..8621011 (25 bp)
GCTAATGGACGAGGCCAAAGAGTCA
LOC_Os03g15670
OsAffx.12877.1.S1_at--574--2791Chr03:8621012..8621036 (25 bp)
AAGAGGCCATCGATGCCCATAAGGC
LOC_Os03g15670
OsAffx.12877.1.S1_at--429--9391Chr03:8621021..8621045 (25 bp)
TCGATGCCCATAAGGCGGAGGCGCC
LOC_Os03g15670
OsAffx.12877.1.S1_at--484--4271Chr03:8621053..8621077 (25 bp)
CCTGGAGGCGCCGTTGACACAACAA
LOC_Os03g15670
OsAffx.12877.1.S1_at--693--6211Chr03:8621057..8621081 (25 bp)
GAGGCGCCGTTGACACAACAACAGG
LOC_Os03g15670
OsAffx.12877.1.S1_at--1042--9651Chr03:8621613..8621637 (25 bp)
TCAGCATCGGTGACATCCAGCGCCT
LOC_Os03g15670
OsAffx.12877.1.S1_at--753--4551Chr03:8621632..8621656 (25 bp)
GCGCCTCGAGTGGAAAGCACTAGAG
LOC_Os03g15670
OsAffx.12877.1.S1_at--898--8151Chr03:8621643..8621667 (25 bp)
GGAAAGCACTAGAGGCCAAGATCCA
LOC_Os03g15670
Target Sequence 
ACCGACGACGTGGACACTAGCAGCATGTCCGGGAGGGAGCGCGAGAGCTCGCGGAGCGGTTGGCGAATGCTAATGGACGA
GGCCAAAGAGTCAAAGAGGCCATCGATGCCCATAAGGCGGAGGCGCCCTGTGGTCCTGGAGGCGCCGTTGACACAACAAC
AGGGGCGGGGTGCGGCGAAGCAGGTCGAGCGGCTCAGCATCGGTGACATCCAGCGCCTCGAGTGGAAAGCACTAGAGGCC
AAGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis