Browse Element(s) Details


OsAffx.12931.1.S1_at

Description tigr:9631.m01876
TID=OsAffx.12931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=T2E6.18
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1900011/11Peroxisomal biogenesis factor 11 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed
LOC_Os03g18990OsAffx.25136.1.S1_x_at11/113+10622599..10624308hypothetical protein
LOC_Os03g18990OsAffx.19217.1.S1_x_at1/113+10622599..10624308hypothetical protein
LOC_Os03g19000OsAffx.12931.1.S1_at11/113+10624831..10625595Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_s_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19020Os.8914.1.S1_at11/113+10630243..10634687PHD-finger family protein, expressed
LOC_Os03g19030OsAffx.15200.2.S1_x_at5/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.2.S1_at3/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.3.S1_s_at1/113+10640221..10640985hypothetical protein
LOC_Os03g19040Os.54627.1.S1_at11/113+10641421..10642485expressed protein
LOC_Os03g19050Os.35344.18.S1_x_at10/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050Os.35344.3.S1_x_at9/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_at5/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_x_at4/113+10643766..10650554SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0016559biological_processperoxisome fission
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12931.1.S1_at--315--8231Chr03:10625098..10625122 (25 bp)
GGCAAGTTCGTCCAGTCCATCAACG
LOC_Os03g19000
OsAffx.12931.1.S1_at--924--9851Chr03:10625203..10625227 (25 bp)
TACAACTTCCTCGAGCAGTTCGCGT
LOC_Os03g19000
OsAffx.12931.1.S1_at--911--2511Chr03:10625206..10625230 (25 bp)
AACTTCCTCGAGCAGTTCGCGTGGC
LOC_Os03g19000
OsAffx.12931.1.S1_at--838--1591Chr03:10625300..10625324 (25 bp)
AGCTGCTGGCGCACGTCGGCTCCAT
LOC_Os03g19000
OsAffx.12931.1.S1_at--27--5111Chr03:10625310..10625334 (25 bp)
GCACGTCGGCTCCATCGCGATCAAG
LOC_Os03g19000
OsAffx.12931.1.S1_at--820--3411Chr03:10625348..10625372 (25 bp)
CAGAGCTGGAGTGTGGCGTCGAGGC
LOC_Os03g19000
OsAffx.12931.1.S1_at--486--7211Chr03:10625365..10625389 (25 bp)
GTCGAGGCGCGGCTCGAGGAAGGTT
LOC_Os03g19000
OsAffx.12931.1.S1_at--418--8911Chr03:10625411..10625435 (25 bp)
TGAGAACGCTGAGCCGGAAGCTGCT
LOC_Os03g19000
OsAffx.12931.1.S1_at--341--2691Chr03:10625440..10625464 (25 bp)
AAGCTGATGTCCCTTGTGCAGGACA
LOC_Os03g19000
OsAffx.12931.1.S1_at--80--9331Chr03:10625449..10625473 (25 bp)
TCCCTTGTGCAGGACATGGTGGATT
LOC_Os03g19000
OsAffx.12931.1.S1_at--77--10831Chr03:10625453..10625477 (25 bp)
TTGTGCAGGACATGGTGGATTCCGC
LOC_Os03g19000
Target Sequence 
GGCAAGTTCGTCCAGTCCATCAACGCCCTCCGCGCCGCCGCCTACCACCCCCACCCCCACGTGCACCCGCTCCTCGTCCT
CCTCGCGTACGGCGGCCAGGGCGTCTACAACTTCCTCGAGCAGTTCGCGTGGCTGGCCAAGGCCGGCCTCCTGCCCGCGC
GCCTCCTCCCCCGCCGCCTCCATCGCATCGGCGTCTGGGCGCAGCTGCTGGCGCACGTCGGCTCCATCGCGATCAAGCTG
GAGGAGGTGGCAGAGCTGGAGTGTGGCGTCGAGGCGCGGCTCGAGGAAGGTTGCGGAGAGGAGAGCGAGGTGGTGAGAAC
GCTGAGCCGGAAGCTGCTGCTCAAGCTGATGTCCCTTGTGCAGGACATGGTGGATTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis