Browse Element(s) Details


OsAffx.12961.1.S1_at

Description tigr:9631.m02092
TID=OsAffx.12961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2099011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21010OsAffx.27944.1.S1_at10/113+11902526..11902789hypothetical protein
LOC_Os03g21010OsAffx.27944.1.S1_x_at9/113+11902526..11902789hypothetical protein
LOC_Os03g21020OsAffx.20881.1.S1_x_at11/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21020Os.55179.1.S1_at10/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12961.1.S1_at--130--5511Chr03:11895551..11895739 (25 bp)
GAACACCGTCTTGTGGCTGGAGTAA
LOC_Os03g20990
OsAffx.12961.1.S1_at--230--2171Chr03:11895553..11895741 (25 bp)
ACACCGTCTTGTGGCTGGAGTAAAG
LOC_Os03g20990
OsAffx.12961.1.S1_at--1154--4231Chr03:11895556..11895744 (25 bp)
CCGTCTTGTGGCTGGAGTAAAGAAT
LOC_Os03g20990
OsAffx.12961.1.S1_at--62--3111Chr03:11895742..11895766 (25 bp)
AATATGAGAAGCCATACCGTGTGGT
LOC_Os03g20990
OsAffx.12961.1.S1_at--53--8911Chr03:11895746..11895770 (25 bp)
TGAGAAGCCATACCGTGTGGTGCAC
LOC_Os03g20990
OsAffx.12961.1.S1_at--244--1451Chr03:11895748..11895772 (25 bp)
AGAAGCCATACCGTGTGGTGCACGC
LOC_Os03g20990
OsAffx.12961.1.S1_at--901--2631Chr03:11895750..11895774 (25 bp)
AAGCCATACCGTGTGGTGCACGCGT
LOC_Os03g20990
OsAffx.12961.1.S1_at--395--311Chr03:11895755..11895779 (25 bp)
ATACCGTGTGGTGCACGCGTCGCTC
LOC_Os03g20990
OsAffx.12961.1.S1_at--22--1791Chr03:11895757..11895781 (25 bp)
ACCGTGTGGTGCACGCGTCGCTCTC
LOC_Os03g20990
OsAffx.12961.1.S1_at--533--9731Chr03:11896213..11896237 (25 bp)
TCAAGGTTGATACGTGTGGCGCCGT
LOC_Os03g20990
OsAffx.12961.1.S1_at--32--6651Chr03:11896218..11896242 (25 bp)
GTTGATACGTGTGGCGCCGTGCAGC
LOC_Os03g20990
Target Sequence 
GAACACCGTCTTGTGGCTGGAGTAAAGAATATGAGAAGCCATACCGTGTGGTGCACGCGTCGCTCTCGCGCGGGCGGCTC
GGGGGGCAAAAACCCTAGCCTCCCGCGCCTGTCAGCTCCCTCCCGGCGTGACGTGGACGGGGCAACGCCGATGAGGTACC
CCACCGCCGGGAGAAGTGGAGGCGGCGGGGCGGTGTGGGGTGGCGGCGGATCCGGCACCCCCATGGCCGGATCTGGCGCG
GCAGCGCGGCCCGGCGGTGGTGCGCGGCAGGGGGCGGCGACGGTGGCCCGGCGGCGCGATGCGGCTGGGGGCGGCGGCGG
CGGCCCGGCGGCTGGGAGCGGCACCTGGCAAGGCGGCGGCGGCACCCCGCCCAGATCCGGCGTCCCCGCGGCCGGATCCG
ACTCCCGGATGGTCAGGGTCGTTATGGCCGGCGTCGCCGGCGACGGGAGGACGACGCGTGCGGAAGGACGGCGCATGCGC
GACGGGAGGACGCCGGCGTCAAGGTTGATACGTGTGGCGCCGTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis