Browse Element(s) Details


OsAffx.12974.1.S1_x_at

Description tigr:9631.m02161
TID=OsAffx.12974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2163011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21670OsAffx.12977.1.S1_at11/113+12350971..12351207hypothetical protein
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12974.1.S1_x_at--528--6071Chr03:12330462..12330486 (25 bp)
GAGTTTAAGCTAGTTGGACTGCACA
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--1079--7471Chr03:12330763..12330787 (25 bp)
GTGGGCTACAGTGTTGTTACATCTA
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--746--2971Chr03:12330796..12330932 (25 bp)
AATGTTGGTAAGGTGCGTGGCTTCA
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--784--7531Chr03:12330924..12330948 (25 bp)
GTGGCTTCACCTTTGACATCAACAC
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--842--2471Chr03:12330944..12330968 (25 bp)
AACACTGGTGCTATGGAGTCTCTTG
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--39--5911Chr03:12330968..12330992 (25 bp)
GAGCTTGACTCGTTTGGGATTTCCA
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--794--10231Chr03:12330980..12331004 (25 bp)
TTTGGGATTTCCATTGTCCCTTCTA
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--438--7231Chr03:12330995..12331107 (25 bp)
GTCCCTTCTAGTCTGGTAAGCACAT
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--327--5351Chr03:12331164..12331188 (25 bp)
GAAGATGCAATCTCTCGGGTTCAAC
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--801--2351Chr03:12331383..12331407 (25 bp)
AAAGCTCGGCGTGTTCAGAGACAAA
LOC_Os03g21630
OsAffx.12974.1.S1_x_at--332--7811Chr03:12331410..12331434 (25 bp)
GGTCTACGAAATTCCAGTGGCCGAA
LOC_Os03g21630
Target Sequence 
GAGTTTAAGCTAGTTGGACTGCACAGCTTGGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAGGTGCG
TGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTA
GTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCA
ATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAA
CGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12974.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis