Browse Element(s) Details


OsAffx.13225.1.S1_at

Description tigr:9631.m03639
TID=OsAffx.13225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3794011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37890Os.46012.2.S1_x_at10/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.46012.3.S1_x_at7/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.27088.1.A1_x_at5/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37890Os.54691.1.S1_x_at1/113+20997505..21000198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37900NANA3+21004927..21005340scarecrow transcription factor family protein, putative
LOC_Os03g37920Os.53904.1.S1_at11/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_x_at2/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.26070.2.S1_x_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37920OsAffx.6056.1.S1_at1/113+21011445..21014620transposon protein, putative, unclassified, expressed
LOC_Os03g37930OsAffx.3426.1.S1_at11/113+21015268..21019598Potassium transporter 1, putative
LOC_Os03g37940OsAffx.13225.1.S1_at11/113+21021183..21021653hypothetical protein
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13225.1.S1_at--732--3651Chr03:21021225..21021249 (25 bp)
CTTCTTCCAAGCTCGACTGGCAAAG
LOC_Os03g37940
OsAffx.13225.1.S1_at--279--10671Chr03:21021229..21021253 (25 bp)
TTCCAAGCTCGACTGGCAAAGGCGG
LOC_Os03g37940
OsAffx.13225.1.S1_at--649--4371Chr03:21021231..21021255 (25 bp)
CCAAGCTCGACTGGCAAAGGCGGAA
LOC_Os03g37940
OsAffx.13225.1.S1_at--466--1331Chr03:21021304..21021328 (25 bp)
AGAGGAGCTGGCCATGGCTCTCTTC
LOC_Os03g37940
OsAffx.13225.1.S1_at--916--3491Chr03:21021316..21021340 (25 bp)
CATGGCTCTCTTCTTCTATGGTGGT
LOC_Os03g37940
OsAffx.13225.1.S1_at--948--3751Chr03:21021321..21021345 (25 bp)
CTCTCTTCTTCTATGGTGGTAGGTC
LOC_Os03g37940
OsAffx.13225.1.S1_at--970--3631Chr03:21021325..21021349 (25 bp)
CTTCTTCTATGGTGGTAGGTCTTGA
LOC_Os03g37940
OsAffx.13225.1.S1_at--923--10571Chr03:21021329..21021353 (25 bp)
TTCTATGGTGGTAGGTCTTGACGGT
LOC_Os03g37940
OsAffx.13225.1.S1_at--496--3211Chr03:21021557..21021581 (25 bp)
CAAGGAGAAGCCGTGCAGCCGTGGA
LOC_Os03g37940
OsAffx.13225.1.S1_at--155--5971Chr03:21021580..21021604 (25 bp)
GAGAAGGCGTGCCATCAGAGGCCGA
LOC_Os03g37940
OsAffx.13225.1.S1_at--650--4651Chr03:21021586..21021610 (25 bp)
GCGTGCCATCAGAGGCCGAGGAGAA
LOC_Os03g37940
Target Sequence 
CTTCTTCCAAGCTCGACTGGCAAAGGCGGAAGCGGCGATGAGGCTGCTGCTGTGGGGAAGAAAACGAGAGAGATAGGGGA
GAGGAGCTGGCCATGGCTCTCTTCTTCTATGGTGGTAGGTCTTGACGGTGGTGATGATGACGATGAGTGGCAGGCCAAGG
AGAAGCCGTGCAGCCGTGGAGAAGGCGTGCCATCAGAGGCCGAGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis