Browse Element(s) Details


OsAffx.13245.1.S1_x_at

Description tigr:9631.m03760
TID=OsAffx.13245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3917011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein
LOC_Os03g39170OsAffx.13245.1.S1_x_at11/113+21711489..21713402expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_at11/113+21716076..21718606expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_s_at11/113+21716076..21718606expressed protein
LOC_Os03g39190OsAffx.26000.2.S1_at11/113+21719573..21720901hypothetical protein
LOC_Os03g39190OsAffx.26000.1.S1_at1/113+21719573..21720901hypothetical protein
LOC_Os03g39200OsAffx.28610.2.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.21756.5.A1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.13247.1.S1_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200Os.7307.3.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39210NANA3+21729961..21734030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39220OsAffx.7903.2.S1_x_at1/113+21736961..21737791hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13245.1.S1_x_at--221--8011Chr03:21712900..21712924 (25 bp)
GGATGGACTCGTTCGACATGGCGGA
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--432--871Chr03:21712917..21712941 (25 bp)
ATGGCGGAGCTCGTCCTCAGGTCCG
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--1119--4591Chr03:21713044..21713068 (25 bp)
GCGACGTCGACTCCACAAGCTGGGA
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--1001--1891Chr03:21713047..21713071 (25 bp)
ACGTCGACTCCACAAGCTGGGACAA
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--867--1791Chr03:21713129..21713153 (25 bp)
ACCGCTGGAGGCCAGGGCGAAGGAG
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--22--4071Chr03:21713161..21713185 (25 bp)
CGATGGCCAAGAAGTGGATCGCCAT
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--902--3211Chr03:21713168..21713192 (25 bp)
CAAGAAGTGGATCGCCATGGTCGCC
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--386--1491Chr03:21713209..21713233 (25 bp)
AGCACCAGCGGGTGGCCTGGGCCCG
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--343--811Chr03:21713307..21713331 (25 bp)
ATGGTGTTCAAAACCGTCGGCGACA
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--1071--4491Chr03:21713343..21713367 (25 bp)
GCCGAGCTGATCAAGAGCCTTGGCC
LOC_Os03g39170
OsAffx.13245.1.S1_x_at--557--1611Chr03:21713347..21713371 (25 bp)
AGCTGATCAAGAGCCTTGGCCTGCC
LOC_Os03g39170
Target Sequence 
GGATGGACTCGTTCGACATGGCGGAGCTCGTCCTCAGGTCCGGCCGCGGCATCGCGGGCGAGTTCCTCCCGGCGCTCCGC
CGCGCGCCGGACGCGCCCGCGCTCGCGCTCCACGCCGCCGGGTACGTCCTCTCCGCGGGGCCGCGCGACGTCGACTCCAC
AAGCTGGGACAACCTCGCGGCGCTCCTCCGCGGCGTGCGCAGGCTCGCCACCAGCGGCAGAGCCGCGCCACCGCTGGAGG
CCAGGGCGAAGGAGGCCACGGCGATGGCCAAGAAGTGGATCGCCATGGTCGCCGGCGAGGCGGAGCGCGAGCACCAGCGG
GTGGCCTGGGCCCGTTCGGCCACCTGGGCGCTCCTCCAGTTCGTCGCCGCCTACGCCATCGCCGGCAACCTGGAGGTGAA
GGAGATGATGGTGTTCAAAACCGTCGGCGACAGGGACGGCGGCGCCGAGCTGATCAAGAGCCTTGGCCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13245.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis