Browse Element(s) Details


OsAffx.13248.1.S1_at

Description tigr:9631.m03770
TID=OsAffx.13248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3927011/11hypothetical protein
LOC_Os07g119301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39230Os.53503.1.S1_at11/113+21739478..21745800OTU-like cysteine protease family protein, expressed
LOC_Os03g39240OsAffx.7903.2.S1_x_at3/113+21747490..21748332hypothetical protein
LOC_Os03g39250OsAffx.22947.1.S1_x_at3/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.2.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250Os.52609.1.S1_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.5.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.3.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39270OsAffx.13248.1.S1_at11/113+21770766..21772793hypothetical protein
LOC_Os03g39270Os.54506.1.S1_at11/113+21770766..21772793hypothetical protein
LOC_Os03g39284OsAffx.7903.3.S1_x_at11/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39284OsAffx.7903.3.S1_at10/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39284OsAffx.7903.2.S1_x_at5/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39300NANA3+21792335..21792607hypothetical protein
LOC_Os03g39310Os.31929.3.S1_x_at1/113+21797392..21798352hypothetical protein
LOC_Os03g39310Os.31929.2.S1_x_at1/113+21797392..21798352hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13248.1.S1_at--464--2511Chr03:21771328..21771347 (20 bp)
AACATCTACCGGTGATGCTGTCTAC
LOC_Os03g39270
OsAffx.13248.1.S1_at--647--7951Chr03:21771302..21771326 (25 bp)
GGATACCGCCATGTCGTCGAGATGC
LOC_Os03g39270
OsAffx.13248.1.S1_at--565--3651Chr03:21771249..21771273 (25 bp)
CTTCTCTTCTGTAATGCGCGCCGTA
LOC_Os03g39270
OsAffx.13248.1.S1_at--504--971Chr03:21771207..21771231 (25 bp)
AGGAGCAGCCACGAGTGTCGCCCGA
LOC_Os03g39270
OsAffx.13248.1.S1_at--903--5891Chr03:21771184..21771208 (25 bp)
GAGCTGTTTCTGATCCAGGAGACGG
LOC_Os03g39270
OsAffx.13248.1.S1_at--977--8671Chr03:21771110..21771134 (25 bp)
TGTGACGCACTGAAGGTCCCCGGAG
LOC_Os03g39270
OsAffx.13248.1.S1_at--570--4031Chr03:21771053..21771077 (25 bp)
CGTTCGTCAAGTCTGGCTGTGATTC
LOC_Os03g39270
OsAffx.13248.1.S1_at--79--8051Chr03:21771011..21771035 (25 bp)
GGAGTTGCCATGTCAACCGATCTGT
LOC_Os03g39270
OsAffx.13248.1.S1_at--442--6391Chr03:21770979..21771003 (25 bp)
GATCGCAAGCGTCTGTCAAGCTCGA
LOC_Os03g39270
OsAffx.13248.1.S1_at--1--491Chr03:21770928..21770952 (25 bp)
ATCTGTTCGAGCTGCCGGTGATGAT
LOC_Os03g39270
OsAffx.13248.1.S1_at--299--9912Chr07:6616159..6616181 (23 bp)
TACTCGTTGCGATCTCGCCGAGATA
LOC_Os07g11930
Target Sequence 
AACATCTACCGGTGATGCTGTCTACCGGATACCGCCATGTCGTCGAGATGCGCCGATGCCCCCATCTCGCCAACTGCGGC
TTCTCTTCTGTAATGCGCGCCGTACCCTCGCCGGCGATCGCAGGAGCAGCCACGAGTGTCGCCCGAGCTGTTTCTGATCC
AGGAGACGGTGGCAGTCGCTGGGATGTTGCTCAAGGAGCCGTCGACATGCCACCCTGCTGTGACGCACTGAAGGTCCCCG
GAGCAGTCGCGGATACCGTCGAGGTGCCCGTACGCCGTTCGTCAAGTCTGGCTGTGATTCTTTCACTTCATCACGCCGGA
GTTGCCATGTCAACCGATCTGTTGGCGCTGATCGCAAGCGTCTGTCAAGCTCGATGCCACTCGTCCTCAGGACTGATGCC
ATCTGTTCGAGCTGCCGGTGATGATTCTACTCGTTGCGATCTCGCCGAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis