Browse Element(s) Details


OsAffx.13378.1.S1_at

Description tigr:9631.m04481
TID=OsAffx.13378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative RNA pol II accessory factor (with alternative splicing)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4619010/11RNA pol II accessory factor, Cdc73 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46170NANA3+26057015..26063594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46180OsAffx.13377.1.S1_at11/113+26069175..26070086Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46190Os.53913.1.S1_at11/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46190OsAffx.13378.1.S1_at10/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46200OsAffx.25574.2.S1_x_at11/113+26074117..26074728acetyltransferase, GNAT family protein, expressed
LOC_Os03g46220NANA3+26082364..26088141retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.27141.1.S1_at11/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.57365.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_x_at9/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.28943.1.S1_x_at4/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46240OsAffx.13379.1.S1_at11/113+26098221..26098454hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13378.1.S1_at--798--3571NONE
CATATAAGTTTCACGCTGAGCGATA
NONE
OsAffx.13378.1.S1_at--280--5331Chr03:26070408..26070432 (25 bp)
GAAGTGGATGCTATTCTGGGTGAAT
LOC_Os03g46190
OsAffx.13378.1.S1_at--228--8171Chr03:26070372..26070396 (25 bp)
GGAACAGCCATCCTTGATCTTTGTT
LOC_Os03g46190
OsAffx.13378.1.S1_at--879--431Chr03:26070356..26070380 (25 bp)
ATCTTTGTTTCTTTAGTGACCTTAG
LOC_Os03g46190
OsAffx.13378.1.S1_at--1058--9131Chr03:26070320..26070344 (25 bp)
TGCGATGGCAGGCAGGAACCTCCTT
LOC_Os03g46190
OsAffx.13378.1.S1_at--752--1811Chr03:26070289..26070313 (25 bp)
ACCCATGAGCATGTGTAACCTGTGT
LOC_Os03g46190
OsAffx.13378.1.S1_at--898--7051Chr03:26070275..26070299 (25 bp)
GTAACCTGTGTACAATCAGTCGCTG
LOC_Os03g46190
OsAffx.13378.1.S1_at--155--411Chr03:26070261..26070285 (25 bp)
ATCAGTCGCTGAGCTATGGCGCATG
LOC_Os03g46190
OsAffx.13378.1.S1_at--533--6591Chr03:26070220..26070244 (25 bp)
GATTGCTGACATGTGCCTTGTTGAC
LOC_Os03g46190
OsAffx.13378.1.S1_at--948--3611Chr03:26070204..26070228 (25 bp)
CTTGTTGACGCACGCATTTGTCGTG
LOC_Os03g46190
OsAffx.13378.1.S1_at--1023--211Chr03:26070189..26070213 (25 bp)
ATTTGTCGTGCACTTGTCATATTTT
LOC_Os03g46190
Target Sequence 
CATATAAGTTTCACGCTGAGCGATAGAAGTGGATGCTATTCTGGGTGAATTATTGACAGGTGGAACAGCCATCCTTGATC
TTTGTTTCTTTAGTGACCTTAGATATGTTCAAATGCGATGGCAGGCAGGAACCTCCTTGCCTACACCCATGAGCATGTGT
AACCTGTGTACAATCAGTCGCTGAGCTATGGCGCATGGGCATGTTTAATTGCAGATTGCTGACATGTGCCTTGTTGACGC
ACGCATTTGTCGTGCACTTGTCATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis